Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium89g00002 ATGGAGCACTATGACCGTGATTTCTTGGAGGAACTGATAAGTACAGAAGAAACTCAGTTCTTCTGTAATGGCTGGAGTAGTTTTGACTGTTTTGATCAAAACTCTCTACCTTACCTCCCAAACTCTTCTTCTGGTCAACAAGTTCCTGAAAGCTACAACGACTACTACCCATTCAATGAAAACTATGGCTCTTTACTCGATGAATCCTCACCAAAGATTATCGATTCTTACTATAGTACACTTGATACTCCACTCAACACCCTTGGTCAAGAGGATTATCCATTGTCCTTTATGGAAGAAGAGGACCCCGGTATGCTTGGAGAAGAGCTTAAGAATTTGGAGCTGCAAACTACGTGCAAAGCGGAGCCAACCCGGTCCTCCGAAATGCCAGTTTTCAACATCGGAACGGGTCTGGAAAGAAAAAATCGGTCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGGAAGAGATTAAATGACAGACTCTCAATGCTGAGAGCTATTGTTCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGGGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTTCAGCAAGAAGTAGAAGTGGATTCTAAAATGGCAGGCATTTTCAAAGATGTGAAGCCAAATGAAATCCTAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGGAGTGCGGACACACGGGTGGAAATTTGCTGTGCAGGAAAGCAAGGATTGTTACAATCAACAGTAAACACTCTGGAGGCTTTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATCGGAGCAAAGGGCAATGCTGAGTTCTGAAGATATAAAGCAAGCGTTGTATAGAAGTGCAGGATATGGAGGAAGGTGTTTGTGA 954 0.4235 MEHYDRDFLEELISTEETQFFCNGWSSFDCFDQNSLPYLPNSSSGQQVPESYNDYYPFNENYGSLLDESSPKIIDSYYSTLDTPLNTLGQEDYPLSFMEEEDPGMLGEELKNLELQTTCKAEPTRSSEMPVFNIGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVDSKMAGIFKDVKPNEILVRNSPKFEVERSADTRVEICCAGKQGLLQSTVNTLEALGLEIQQCVISCFNDFTMQASCSEESEQRAMLSSEDIKQALYRSAGYGGRCL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium89g00002 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 211 IPR036638 GO:0046983
Vium89g00002 317 SMART finulus 155 204 IPR011598 GO:0046983
Vium89g00002 317 Gene3D - 157 230 IPR036638 GO:0046983
Vium89g00002 317 Coils Coil 188 215 - -
Vium89g00002 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vium89g00002 317 Pfam Helix-loop-helix DNA-binding domain 155 198 IPR011598 GO:0046983
Vium89g00002 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 53 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium89g00002 Vium-Chr89 14822 16668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium89g00002 134 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.138 3.01e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium89g00002 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium89g00002 - - gmx:100784380 539.265