Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8997g00004 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGCTCAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCATACCCTATCAAGGTATATGAAAGGCACAGAATTGGATTCTGCAGAGCAACCTATTGATGTGTCCCCAAAAGATGTTACGGTTATGGAGCCTGATACAGATCTTTTGATGGATGAAATAACAAAGCTTCGATCTGCATACTCGTAA 336 0.4137 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYMKGTELDSAEQPIDVSPKDVTVMEPDTDLLMDEITKLRSAYS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8997g00004 111 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium8997g00004 111 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vium8997g00004 111 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 80 - -
Vium8997g00004 111 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Vium8997g00004 111 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium8997g00004 111 Gene3D - 14 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8997g00004 Vium-Chr8997 30308 32133 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8997g00004 1 110 MADS-box Gene Family AT5G13790 59.091 4.44e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium8997g00004 SRF-TF 6.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8997g00004 - - vum:124847876 216.853