Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8997g00002 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGCTCAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCATACCCTATCAAGGTATATGAAAGGCACAGAATTGGATTCTGCAGAGCAACCTATTGATGTGTCCCCAAAAGATGTTACGGTTATGGAGCCTGATACAGATCTTTTGATGGATGAAATAACAAAGCTTCGATCTGCATACTCAAATATGAAGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAGCTGCAGCACCTAGAAAAGCAGCTGAGTGAAGGGATATTAGCTGTCAAAGACAGGAAGGAACAAGTACTTGTAGAACAACTTACAAGGTCCAGGATACAGGAGCAAAAAGCTATGCTGGAAAATGAAGTTCTGCGTAAACAGCTTGAGGAGATACAAAATAAAACAAAGACACAGTTCCTTGAATTCAGTTGTTTGGATAGAACATTTTCCAAGAACAGTTCAAAGTCTCTTTTCAATTGTGCTTCAGAGGAAAATGGTCATTCAGATACTTCTTTGCAGTTAGGGTTGTCAACACCAGATTATGGTCATCAGAGGAAAGGATGGAAAATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGA 747 0.4096 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYMKGTELDSAEQPIDVSPKDVTVMEPDTDLLMDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDRKEQVLVEQLTRSRIQEQKAMLENEVLRKQLEEIQNKTKTQFLEFSCLDRTFSKNSSKSLFNCASEENGHSDTSLQLGLSTPDYGHQRKGWKIEPCNDSGSQVASQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8997g00002 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vium8997g00002 248 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Vium8997g00002 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 MobiDBLite consensus disorder prediction 209 223 - -
Vium8997g00002 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Vium8997g00002 248 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Vium8997g00002 248 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8997g00002 248 MobiDBLite consensus disorder prediction 209 248 - -
Vium8997g00002 248 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium8997g00002 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium8997g00002 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vium8997g00002 248 Coils Coil 154 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8997g00002 Vium-Chr8997 17400 21367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8997g00002 1 241 MADS-box Gene Family AT5G13790 47.368 1.56e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium8997g00002 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8997g00002 - - gmx:100792278 408.683