Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8994g00004 ATGGCAGGATCGTCAGAGAAGCAAGTGGTGGTGATCGGAATAGATGACAGTGAACAGAGCACGTACGCTCTCAAATGGACCCTTGATCACTTCTTTCCGAGTCCAATCTTCAAGCTGGTTCTCGTTCACTCCAGACCCACCGCCACTTCCACCGTGGGTCTCGCCGGACCTGTGTATGTAGGTGCCGCTGAGATATTGCCTATTGTAGATTCTGATTTGAGAAAGATTGCCGCCAGAGTCGTTGATTCCGCTAGACAACTTTGCATCGACAAATCTGTAGATGATGTCACAGCGGAGGTTGTGGAAGGCGATCCCAGAAATGTTCTTTGTGATGCTGTGGAAAAGTATCATGCAGCAGTATTGGTTGTGGGTAGTCACGGTTATGGAGCTATAAAAAGGTACTTGCTTTGCAGTTTTGGGTCTTAA 426 0.4789 MAGSSEKQVVVIGIDDSEQSTYALKWTLDHFFPSPIFKLVLVHSRPTATSTVGLAGPVYVGAAEILPIVDSDLRKIAARVVDSARQLCIDKSVDDVTAEVVEGDPRNVLCDAVEKYHAAVLVVGSHGYGAIKRYLLCSFGS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8994g00004 141 CDD USP_Like 10 138 - -
Vium8994g00004 141 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 5 138 - -
Vium8994g00004 141 Gene3D HUPs 1 141 IPR014729 -
Vium8994g00004 141 Pfam Universal stress protein family 9 138 IPR006016 -
Vium8994g00004 141 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8994g00004 Vium-Chr8994 23370 24380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8994g00004 20 133 Plant U-box Gene Family AT5G57035 29.060 2.91e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8994g00004 - - gmx:100816212 231.106