Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8994g00003 ATGGCAGGATCGTCAGAGAAGCAAGTGGTGGTGATCGGAATAGATGACAGTGAACAGAGCACGTACGCTCTCAAATGGACCCTTGATCACTTCTTTCCGAGTCCAATCTTCAAGCTGGTTCTCGTTCACTCCAGACCCACCGCCACTTCCACCGTGGGTCTCGCCGGACCTGGTGCCGCTGAGATATTGCCTATTGTAGATTCTGATTTGAGAAAGATTGCCGCCAGAGTCGTTGATTCCGCTAGACAACTTTGCATCGACAAATCTGTAGATGATGTCACAGCGGAGGTTGTGGAAGGCGATCCCAGAAATGTTCTTTGTGATGCTGTGGAAAAGTATCATGCAGCAGTATTGGTTGTGGGTAGTCACGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGGAGTGTAAGTGATTATTGTGCTCATCATGCTCACTGCACGGTAATGATAGTGAAGAAGCCAAAAATCAAACATTGA 477 0.4717 MAGSSEKQVVVIGIDDSEQSTYALKWTLDHFFPSPIFKLVLVHSRPTATSTVGLAGPGAAEILPIVDSDLRKIAARVVDSARQLCIDKSVDDVTAEVVEGDPRNVLCDAVEKYHAAVLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8994g00003 158 Gene3D HUPs 1 158 IPR014729 -
Vium8994g00003 158 CDD USP_Like 10 151 - -
Vium8994g00003 158 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 5 158 - -
Vium8994g00003 158 Pfam Universal stress protein family 9 152 IPR006016 -
Vium8994g00003 158 PRINTS Universal stress protein signature 130 152 IPR006015 -
Vium8994g00003 158 PRINTS Universal stress protein signature 7 25 IPR006015 -
Vium8994g00003 158 PRINTS Universal stress protein signature 112 124 IPR006015 -
Vium8994g00003 158 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8994g00003 Vium-Chr8994 23100 24379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8994g00003 20 153 Plant U-box Gene Family AT5G57035 27.027 2.43e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8994g00003 - - gmx:100527357 287.73