Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8994g00002 ATGGCAGGATCGTCAGAGAAGCAAGTGGTGGTGATCGGAATAGATGACAGTGAACAGAGCACGTACGCTCTCAAATGGACCCTTGATCACTTCTTTCCGAGTCCAATCTTCAAGCTGGTTCTCGTTCACTCCAGACCCACCGCCACTTCCACCGTGGGTCTCGCCGGACCTGTGTATGTAGGTGCCGCTGAGATATTGCCTATTGTAGATTCTGATTTGAGAAAGATTGCCGCCAGAGTCGTTGATTCCGCTAGACAACTTTGCATCGACAAATCTGTAGATGATGTCACAGCGGAGGTTGTGGAAGGCGATCCCAGAAATGTTCTTTGTGATGCTGTGGAAAAGTATCATGCAGCAGTATTGGTTGTGGGTAGTCACGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGGAGTGTAAGTGATTATTGTGCTCATCATGCTCACTGCACGGTAATGATAGTGAAGAAGCCAAAAATCAAACATTGA 486 0.4691 MAGSSEKQVVVIGIDDSEQSTYALKWTLDHFFPSPIFKLVLVHSRPTATSTVGLAGPVYVGAAEILPIVDSDLRKIAARVVDSARQLCIDKSVDDVTAEVVEGDPRNVLCDAVEKYHAAVLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8994g00002 161 CDD USP_Like 10 154 - -
Vium8994g00002 161 Pfam Universal stress protein family 9 155 IPR006016 -
Vium8994g00002 161 Gene3D HUPs 1 161 IPR014729 -
Vium8994g00002 161 PRINTS Universal stress protein signature 7 25 IPR006015 -
Vium8994g00002 161 PRINTS Universal stress protein signature 115 127 IPR006015 -
Vium8994g00002 161 PRINTS Universal stress protein signature 133 155 IPR006015 -
Vium8994g00002 161 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 5 161 - -
Vium8994g00002 161 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8994g00002 Vium-Chr8994 23100 24380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8994g00002 20 156 Plant U-box Gene Family AT5G57035 27.703 2.22e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8994g00002 - - gmx:100816212 288.885