Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8994g00001 ATGGCAGGATCGTCAGAGAAGCAAGTGGTGGTGATCGGAATAGATGACAGTGAACAGAGCACGTACGCTCTCAAATGGACCCTTGATCACTTCTTTCCGAGTCCAATCTTCAAGCTGGTTCTCGTTCACTCCAGACCCACCGCCACTTCCACCGTGGGTCTCGCCGGACCTGATTCTGATTTGAGAAAGATTGCCGCCAGAGTCGTTGATTCCGCTAGACAACTTTGCATCGACAAATCTGTAGATGATGTCACAGCGGAGGTTGTGGAAGGCGATCCCAGAAATGTTCTTTGTGATGCTGTGGAAAAGTATCATGCAGCAGTATTGGTTGTGGGTAGTCACGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGGAGTGTAAGTGATTATTGTGCTCATCATGCTCACTGCACGGTAATGATAGTGAAGAAGCCAAAAATCAAACATTGA 450 0.4711 MAGSSEKQVVVIGIDDSEQSTYALKWTLDHFFPSPIFKLVLVHSRPTATSTVGLAGPDSDLRKIAARVVDSARQLCIDKSVDDVTAEVVEGDPRNVLCDAVEKYHAAVLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKIKH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8994g00001 149 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 145 - -
Vium8994g00001 149 CDD USP_Like 10 142 - -
Vium8994g00001 149 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 5 149 - -
Vium8994g00001 149 Gene3D HUPs 1 149 IPR014729 -
Vium8994g00001 149 PRINTS Universal stress protein signature 103 115 IPR006015 -
Vium8994g00001 149 PRINTS Universal stress protein signature 7 25 IPR006015 -
Vium8994g00001 149 PRINTS Universal stress protein signature 121 143 IPR006015 -
Vium8994g00001 149 Pfam Universal stress protein family 9 143 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8994g00001 Vium-Chr8994 23100 24380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8994g00001 20 144 Plant U-box Gene Family AT5G57035 27.027 1.54e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8994g00001 - - gmx:100527357 263.848