Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8980g00003 ATGGGGTATGAAACCAGAACACTCTCAGATGAGTATGAAGTCTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACAAGAAAATCAAGCAGTGACACCAAAAGCCTTGTGGCCATCAAAACTTTGAGAAGATCAGGCACTGCCTCAAACTCCAACCACCCTTCTGGGTTTCCAAGACCAAAGGGTGCAGAGAAGAGCTCAGCTGCTATGATGGGGCTCCCATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCTCACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGAGAACTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGGGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGTGAGGAGGGATTCTCCTCTTAAGATCATGGATTTTGGTTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATACATCTTACTCTCTGGGTATGTTGACTTT 747 0.4444 MGYETRTLSDEYEVSDVLGRGGFSVVRKGTRKSSSDTKSLVAIKTLRRSGTASNSNHPSGFPRPKGAEKSSAAMMGLPWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYVDF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8980g00003 249 SMART serkin_6 12 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8980g00003 249 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Vium8980g00003 249 MobiDBLite consensus disorder prediction 46 60 - -
Vium8980g00003 249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vium8980g00003 249 ProSiteProfiles Protein kinase domain profile. 12 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8980g00003 249 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 247 - -
Vium8980g00003 249 Gene3D Phosphorylase Kinase; domain 1 69 133 - -
Vium8980g00003 249 Gene3D Transferase(Phosphotransferase) domain 1 134 249 - -
Vium8980g00003 249 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Vium8980g00003 249 MobiDBLite consensus disorder prediction 46 69 - -
Vium8980g00003 249 SUPERFAMILY Protein kinase-like (PK-like) 5 247 IPR011009 -
Vium8980g00003 249 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Vium8980g00003 249 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 133 - -
Vium8980g00003 249 Pfam Protein kinase domain 90 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8980g00003 Vium-Chr8980 35418 36599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8980g00003 1 249 EF-hand Containing Proteins AT5G23580 35.743 3.07e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vium8980g00003 Pkinase 3.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8980g00003 K13412 - vum:124847861 491.5