Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8980g00002 ATGGGGTATGAAACCAGAACACTCTCAGATGAGTATGAAGTCTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACAAGAAAATCAAGCAGTGACACCAAAAGCCTTGTGGCCATCAAAACTTTGAGAAGATCAGGCACTGCCTCAAACTCCAACCACCCTTCTGGGTTTCCAAGACCAAAGGGTGCAGAGAAGAGCTCAGCTGCTATGATGGGGCTCCCATGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCTCACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGAGAACTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGGGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGTGAGGAGGGATTCTCCTCTTAAGATCATGGATTTTGGTTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGACGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATACATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGCCAGAAACAACAAATGATAATGAATGGGAACTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAGCAACTAATTTCAGATCTTCTGACAGTTGATCCTAGTAGGAGACCTAGTGCTCAAGATCTTCTGAGTCATCCATGGGTGGTAGGTGACAAGGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGAGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCTTTGGTAGGAACACATGATCTCACAGAAGAGGAAATTGAAAACCTCAGGATAAATTTTAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTAAGTGAGTTTGAAGAGGTGCTGAAAGCAATGAATAGGCCATCACTGGTCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATTCTATGTGGCTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTTCGTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGCTGCATCACCAAGGAAGAAGTCGCTTCCATGCTCAGAGCTTTACCAGAAGAGTGTTTGCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTCTTCAAGACCTTGTTCTCTCTTCTCTAAGACCACAATCATAG 1581 0.4383 MGYETRTLSDEYEVSDVLGRGGFSVVRKGTRKSSSDTKSLVAIKTLRRSGTASNSNHPSGFPRPKGAEKSSAAMMGLPWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGTITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGITQSAKQLISDLLTVDPSRRPSAQDLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTEEEIENLRINFKKICVSGDNATLSEFEEVLKAMNRPSLVPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALRLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDLVLSSLRPQS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8980g00002 526 Pfam EF-hand domain pair 440 509 IPR002048 GO:0005509
Vium8980g00002 526 Pfam Protein kinase domain 90 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8980g00002 526 CDD EFh 442 509 IPR002048 GO:0005509
Vium8980g00002 526 SMART serkin_6 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8980g00002 526 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Vium8980g00002 526 MobiDBLite consensus disorder prediction 46 60 - -
Vium8980g00002 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 488 - -
Vium8980g00002 526 CDD STKc_CAMK 12 306 - -
Vium8980g00002 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 134 324 - -
Vium8980g00002 526 Gene3D - 351 519 - -
Vium8980g00002 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 133 - -
Vium8980g00002 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vium8980g00002 526 SMART efh_1 405 433 IPR002048 GO:0005509
Vium8980g00002 526 SMART efh_1 483 511 IPR002048 GO:0005509
Vium8980g00002 526 SMART efh_1 441 469 IPR002048 GO:0005509
Vium8980g00002 526 ProSiteProfiles EF-hand calcium-binding domain profile. 437 472 IPR002048 GO:0005509
Vium8980g00002 526 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 350 519 - -
Vium8980g00002 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Vium8980g00002 526 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
Vium8980g00002 526 ProSiteProfiles Protein kinase domain profile. 12 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8980g00002 526 SUPERFAMILY Protein kinase-like (PK-like) 5 324 IPR011009 -
Vium8980g00002 526 ProSiteProfiles EF-hand calcium-binding domain profile. 408 436 IPR002048 GO:0005509
Vium8980g00002 526 Pfam EF hand 410 425 IPR002048 GO:0005509
Vium8980g00002 526 Gene3D Transferase(Phosphotransferase) domain 1 135 350 - -
Vium8980g00002 526 Coils Coil 354 374 - -
Vium8980g00002 526 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Vium8980g00002 526 Gene3D Phosphorylase Kinase; domain 1 71 134 - -
Vium8980g00002 526 MobiDBLite consensus disorder prediction 46 69 - -
Vium8980g00002 526 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Vium8980g00002 526 SUPERFAMILY EF-hand 352 516 IPR011992 -
Vium8980g00002 526 PRINTS Recoverin family signature 409 430 - -
Vium8980g00002 526 PRINTS Recoverin family signature 499 519 - -
Vium8980g00002 526 PRINTS Recoverin family signature 363 382 - -
Vium8980g00002 526 PRINTS Recoverin family signature 433 452 - -
Vium8980g00002 526 CDD EFh 408 467 IPR002048 GO:0005509
Vium8980g00002 526 ProSiteProfiles EF-hand calcium-binding domain profile. 479 514 IPR002048 GO:0005509
Vium8980g00002 526 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8980g00002 Vium-Chr8980 20199 31644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8980g00002 88 512 EF-hand Containing Proteins AT3G10660 37.757 7.28e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vium8980g00002 Pkinase 1.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8980g00002 K13412 - gmx:732616 971.844