Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium897g00004 ATGGGGTGGTGGCAAAGAGGCCACACCATTGGCCGGGGCTCATCAGCCACCGTCTCCACCGCCACCTGCTGCGCCGGTGGCGCTGTCTTTGCCGTGAAGTCCGCGGAGCTGTCTCAATCGGAGTCTTTGAAAAGGGAGCAGAACATTTTGTCCTCTGTAAGTAGTCCTTATGTGGTTGCGTACAAAGGGTGTGACGTTACGATGGAAAACAACAAGCTCTTGTTCAACCTCTTCATGGAGCACATGCCCTTTGGCACGGTTGCTCAGGCGACTCGCCGGCACGGTGGCCGGCTCGAGGAAGCGACTATGGCACGCTACACCAGGCAAATTGTGCAGGGGCTGGAGTACTTGCATTCAAAAGAGTTGGTGCATTGCGAAATCAAGGGTGCTAATATCTTAATCGGTGAAGATGGGGTGAAGATTGGAGACTTGGGGTGTGCTAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACCCCGATGTTCATGGCCCCAGAGGTGGCGCGTGGAGAGGAGCAAGGGTGTGCCAGTGACGTTTGGTCACTTGGGTGTACTGTGGTTGAAATGGCCACAGGTGATGCACCGTGGCCAAGTGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTGGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAAGGATTTTTTGGAGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTGGTGAACTTTTGAAGCATCCATTTATTGGAAAATCATGTTCCAACAATAAGGAAATTTTGGAATCTAATTCAAGTTCCCCAACTAGTGTTCTTGAGCCATGCTTTTGGAGCTCTGTGGAAGAGTCAGAAAGTGTTGGCGATTTGATTAACAACCCAAGAAAGTTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGCTACCCTGTTGGGCACAACATGATGATGAAAATTGGATCACGGCCAGAGGGAATGGAGGGAAAGGTTTTGGCAATGGTGGGTCAGGGACAGCTTCTGCTAGTCATGAGTTGTCTCACTAG 1068 0.5084 MGWWQRGHTIGRGSSATVSTATCCAGGAVFAVKSAELSQSESLKREQNILSSVSSPYVVAYKGCDVTMENNKLLFNLFMEHMPFGTVAQATRRHGGRLEEATMARYTRQIVQGLEYLHSKELVHCEIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDVWSLGCTVVEMATGDAPWPSVEDPFSVLYHIAYSGEVPEIPCFLSEEAKDFLEKCLRRNPQERWKAGELLKHPFIGKSCSNNKEILESNSSSPTSVLEPCFWSSVEESESVGDLINNPRKFELLAAGRVRMLALSSGLPCWAQHDDENWITARGNGGKGFGNGGSGTASASHELSH 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium897g00004 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 287 - -
Vium897g00004 355 ProSiteProfiles Protein kinase domain profile. 4 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium897g00004 355 Pfam Protein kinase domain 5 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium897g00004 355 SUPERFAMILY Protein kinase-like (PK-like) 3 297 IPR011009 -
Vium897g00004 355 Gene3D Transferase(Phosphotransferase) domain 1 1 304 - -
Vium897g00004 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium897g00004 355 MobiDBLite consensus disorder prediction 341 355 - -
Vium897g00004 355 MobiDBLite consensus disorder prediction 332 355 - -
Vium897g00004 355 CDD STKc_MAPKKK 4 254 - -
Vium897g00004 355 FunFam Mitogen-activated protein kinase kinase kinase 17 3 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium897g00004 Vium-Chr897 29437 30756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium897g00004 4 334 MAP Kinase Kinase Kinase AT1G05100 47.592 3.92e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium897g00004 Pkinase 1.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium897g00004 K20716 - gmx:100819665 563.533