LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium8966g00006	ATGACATTGGTTGACGAGGTGGAGGTGGAAGTGGATGTGGAGGTGGAGGCGTCGGTGCCAGTAAAGAAGGTGCCGTACGGTGACATATTCGAGGCGTCCCGCGCTGGCGACGTGGAGCGGCTCCGGTACCTGCTGGAGACAGGCGTGAACGTCAACGCGCGGGACCAGTGGGACTCGGTGGCCCTCTACTACGCCTGCTTGGTCGGCCACCTCGACGCTGCTCGAATGCTCCTCGAAAACGGCGCCATCTGCTCCGAACACACCTTTGATGGCGACCGCTGCCACTATGCCGCCCTCAATCTCAAGGTCCGGAAACTCCTTAAGGCATTTGAGGCGCGGCCACCGCCCTTGGAACCCTTACAGGCTGCTTTGCGTGACACCTTCCTCGCTTGTGTTTCATCCACTCAGGGGTCCATTTGCTGCCACTTCCCTCCAGATGTAGTATTTATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCAAGATCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCAAAGGAAAAATTGTCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCAGACAGATTAGAGATTGCCATTGATGATATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTATTGAGAAAGAACTAATTCATCAAAAATATGCAGACTATAAATCGTTGGGAAATGTAGATAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCAACCCATGAAAGTGGTCAAGAAGATAAATTGGTTTCTATGATGGATGCCATGCAGATGGCCAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAATATTTTCCGCTGTCATCAAGTTATTCTAGCATCCAGGTCAGAATACTTCAGAGCAAGATTATCACATATGAAGAACTTCAATGAGGGGAAACATGACTTATCTGTTGACACTCTTCCTTGTGTAGAAGAACATGACTTAAGCAAGGAAGCCTTTGAGAAAATGATTGAATATATGTACACTGATCGTTTGCAGGACATAAATCCAGATCAGGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTTGA	1215	0.4519	MTLVDEVEVEVDVEVEASVPVKKVPYGDIFEASRAGDVERLRYLLETGVNVNARDQWDSVALYYACLVGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLEPLQAALRDTFLACVSSTQGSICCHFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSKEKLSYPALYSLVHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVIEKELIHQKYADYKSLGNVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGQEDKLVSMMDAMQMAKSVDDLADVCVKVDRNIFRCHQVILASRSEYFRARLSHMKNFNEGKHDLSVDTLPCVEEHDLSKEAFEKMIEYMYTDRLQDINPDQVWCFQDSGVLS	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium8966g00006	404	PANTHER	ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1	16	394	IPR044515	-
	Vium8966g00006	404	Pfam	BTB/POZ domain	143	241	IPR000210	GO:0005515
	Vium8966g00006	404	Pfam	BTB/POZ domain	312	387	IPR000210	GO:0005515
	Vium8966g00006	404	SUPERFAMILY	Ankyrin repeat	30	108	IPR036770	-
	Vium8966g00006	404	Gene3D	Potassium Channel Kv1.1; Chain A	143	243	IPR011333	-
	Vium8966g00006	404	ProSiteProfiles	Ankyrin repeat profile.	32	56	IPR002110	GO:0005515
	Vium8966g00006	404	SUPERFAMILY	POZ domain	299	394	IPR011333	-
	Vium8966g00006	404	FunFam	BTB/POZ domain-containing protein	140	261	-	-
	Vium8966g00006	404	Pfam	Ankyrin repeats (many copies)	30	78	IPR002110	GO:0005515
	Vium8966g00006	404	ProSiteProfiles	BTB domain profile.	145	212	IPR000210	GO:0005515
	Vium8966g00006	404	Gene3D	Potassium Channel Kv1.1; Chain A	292	399	IPR011333	-
	Vium8966g00006	404	FunFam	BTB/POZ domain-containing protein	23	141	-	-
	Vium8966g00006	404	SUPERFAMILY	POZ domain	142	240	IPR011333	-
	Vium8966g00006	404	ProSiteProfiles	BTB domain profile.	314	390	IPR000210	GO:0005515
	Vium8966g00006	404	SMART	BTB_4	314	402	IPR000210	GO:0005515
	Vium8966g00006	404	SMART	BTB_4	145	242	IPR000210	GO:0005515
	Vium8966g00006	404	CDD	BTB_POZ_ZBTB_KLHL-like	313	394	-	-
	Vium8966g00006	404	Gene3D	-	29	142	IPR036770	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium8966g00006	Vium-Chr8966	44940	52133	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Vium8966g00006		BTB	6.6e-18	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium8966g00006	K10520		-	gmx:100812009	666.381