Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8966g00005 ATGGCGACCGCTGCCACTATGCCGCCCTCAATCTCAAGGTCCGGAAACTCCTTAAGGCATTTGAGGCGCGGCCACCGCCCTTGGAACCCTTACAGGCTGCTTTGCGTGACACCTTCCTCGCTTGGGTCCATTTGCTGCCACTTCCCTCCAGATGTAGTATTTATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCAAGATCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCAAAGGAAAAATTGTCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCAGACAGATTAGAGATTGCCATTGATGATATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTATTGAGAAAGAACTAATTCATCAAAAATATGCAGACTATAAATCGTTGGGAAATGTAGATAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCAACCCATGAAAGTGGTCAAGAAGATAAATTGGTTTCTATGATGGATGCCATGCAGATGGCCAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAATATTTTCCGCTGTCATCAAGTTATTCTAGCATCCAGGTCAGAATACTTCAGAGCAAGATTATCACATATGAAGAACTTCAATGAGGGGAAACATGACTTATCTGTTGACACTCTTCCTTGTGTAGAAGAACATGACTTAAGCAAGGAAGCCTTTGAGAAAATGATTGAATATATGTACACTGATCGTTTGCAGGACATAAATCCAGATCAGGCTGAAGAAATGTTTGATGTTGCTTCTAGATATTTATTGTTTCCTCTCAAGCGTGCAGTCGCTGATGTCTTGTTGCCACACTTGGAAATGGTTTCACTTGATGAACATTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTTGACACCATTGCTTGCAATTTTGAAACTTTTGCTGATAGTAAAGAGTTCCGGGCAATGTTGCTGACTTTGCCTCCACCATCTGGAGACTCGTCCCTTCGTACCACTGTCCCTAGTATTCCTGGATCTTCTCTTAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGCAATTGAAGCGGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGACTAGAGATGCTTATGCTTGTTGCAGAGCAAGAACAATCATCAGATAATGCTGATTCCGATTACACTAGTGCATTTCTTCCCAATCACTACCCTGATTTAAAGTGA 1407 0.4065 MATAATMPPSISRSGNSLRHLRRGHRPWNPYRLLCVTPSSLGSICCHFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSKEKLSYPALYSLVHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVIEKELIHQKYADYKSLGNVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGQEDKLVSMMDAMQMAKSVDDLADVCVKVDRNIFRCHQVILASRSEYFRARLSHMKNFNEGKHDLSVDTLPCVEEHDLSKEAFEKMIEYMYTDRLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSLDEHCHWLILADMYGVFKIREYCLDTIACNFETFADSKEFRAMLLTLPPPSGDSSLRTTVPSIPGSSLNTDQGNLLDDLREKWLAIEAAELDKRDESALQFDKRLEMLMLVAEQEQSSDNADSDYTSAFLPNHYPDLK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8966g00005 468 SMART BTB_4 50 147 IPR000210 GO:0005515
Vium8966g00005 468 SMART BTB_4 219 326 IPR000210 GO:0005515
Vium8966g00005 468 CDD BTB_POZ_ZBTB_KLHL-like 218 309 - -
Vium8966g00005 468 ProSiteProfiles BTB domain profile. 219 295 IPR000210 GO:0005515
Vium8966g00005 468 SUPERFAMILY POZ domain 48 145 IPR011333 -
Vium8966g00005 468 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 27 442 IPR044515 -
Vium8966g00005 468 FunFam BTB/POZ domain-containing protein 45 166 - -
Vium8966g00005 468 Gene3D Potassium Channel Kv1.1; Chain A 45 165 IPR011333 -
Vium8966g00005 468 Gene3D Potassium Channel Kv1.1; Chain A 188 358 IPR011333 -
Vium8966g00005 468 Pfam BTB/POZ domain 48 146 IPR000210 GO:0005515
Vium8966g00005 468 Pfam BTB/POZ domain 217 322 IPR000210 GO:0005515
Vium8966g00005 468 ProSiteProfiles BTB domain profile. 50 117 IPR000210 GO:0005515
Vium8966g00005 468 MobiDBLite consensus disorder prediction 446 468 - -
Vium8966g00005 468 SUPERFAMILY POZ domain 204 325 IPR011333 -
Vium8966g00005 468 CDD BACK 335 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8966g00005 Vium-Chr8966 44520 51940 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8966g00005 BTB 4.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8966g00005 K10520 - gmx:100812009 741.88