Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8966g00004 ATGACATTGGTTGACGAGGTGGAGGTGGAAGTGGATGTGGAGGTGGAGGCGTCGGTGCCAGTAAAGAAGGTGCCGTACGGTGACATATTCGAGGCGTCCCGCGCTGGCGACGTGGAGCGGCTCCGGTACCTGCTGGAGACAGGCGTGAACGTCAACGCGCGGGACCAGTGGGACTCGGTGGCCCTCTACTACGCCTGCTTGGTCGGCCACCTCGACGCTGCTCGAATGCTCCTCGAAAACGGCGCCATCTGCTCCGAACACACCTTTGATGGCGACCGCTGCCACTATGCCGCCCTCAATCTCAAGGTCCGGAAACTCCTTAAGGCATTTGAGGCGCGGCCACCGCCCTTGGAACCCTTACAGGCTGCTTTGCGTGACACCTTCCTCGCTTGTATGCATAACAAAATTGTAATGCTAAGTAGAAAAGAAACAATGCGTGATATAACCTGTATTAGTGAATTTACTTCATTAAATTACTTCCCTCCAGATGTAGTATTTATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCAAGATCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCAAAGGAAAAATTGTCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCAGACAGATTAGAGATTGCCATTGATGATATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTATTGAGAAAGAACTAATTCATCAAAAATATGCAGACTATAAATCGTTGGGAAATGTAGATAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCAACCCATGAAAGTGGTCAAGAAGATAAATTGGTTTCTATGATGGATGCCATGCAGATGGCCAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAATATTTTCCGCTGTCATCAAGTTATTCTAGCATCCAGGTCAGAATACTTCAGAGCAAGATTATCACATATGAAGAACTTCAATGAGGGGAAACATGACTTATCTGTTGACACTCTTCCTTGTGTAGAAGAACATGACTTAAGCAAGGAAGCCTTTGAGAAAATGATTGAATATATGTACACTGATCGTTTGCAGGACATAAATCCAGATCAGGCTGAAGAAATGTTTGATGTTGCTTCTAGATATTTATTGTTTCCTCTCAAGCGTGCAGTCGCTGATGTCTTGTTGCCACACTTGGAAATGGTTTCACTTGATGAACATTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTTGACACCATTGCTTGCAATTTTGAAACTTTTGCTGATAGTAAAGAGTTCCGGGCAATGTTGCTGACTTTGCCTCCACCATCTGGAGACTCGTCCCTTCGTACCACTGTCCCTAGTATTCCTGGATCTTCTCTTAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGCAATTGAAGCGGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGACTAGAGATGCTTATGCTTGTTGCAGAGCAAGAACAATCATCAGATAATGCTGATTCCGATTACACTAGTGCATTTCTTCCCAATCACTACCCTGATTTAAAGTGA 1743 0.4309 MTLVDEVEVEVDVEVEASVPVKKVPYGDIFEASRAGDVERLRYLLETGVNVNARDQWDSVALYYACLVGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLEPLQAALRDTFLACMHNKIVMLSRKETMRDITCISEFTSLNYFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSKEKLSYPALYSLVHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVIEKELIHQKYADYKSLGNVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGQEDKLVSMMDAMQMAKSVDDLADVCVKVDRNIFRCHQVILASRSEYFRARLSHMKNFNEGKHDLSVDTLPCVEEHDLSKEAFEKMIEYMYTDRLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSLDEHCHWLILADMYGVFKIREYCLDTIACNFETFADSKEFRAMLLTLPPPSGDSSLRTTVPSIPGSSLNTDQGNLLDDLREKWLAIEAAELDKRDESALQFDKRLEMLMLVAEQEQSSDNADSDYTSAFLPNHYPDLK 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8966g00004 580 SUPERFAMILY POZ domain 316 437 IPR011333 -
Vium8966g00004 580 Gene3D - 29 155 IPR036770 -
Vium8966g00004 580 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Vium8966g00004 580 CDD BTB_POZ_ZBTB_KLHL-like 330 421 - -
Vium8966g00004 580 SMART BTB_4 162 259 IPR000210 GO:0005515
Vium8966g00004 580 SMART BTB_4 331 438 IPR000210 GO:0005515
Vium8966g00004 580 SUPERFAMILY POZ domain 157 257 IPR011333 -
Vium8966g00004 580 ProSiteProfiles BTB domain profile. 162 229 IPR000210 GO:0005515
Vium8966g00004 580 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
Vium8966g00004 580 CDD BACK 447 485 - -
Vium8966g00004 580 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 16 554 IPR044515 -
Vium8966g00004 580 FunFam BTB/POZ domain-containing protein 23 147 - -
Vium8966g00004 580 SUPERFAMILY Ankyrin repeat 30 107 IPR036770 -
Vium8966g00004 580 FunFam BTB/POZ domain-containing protein 156 278 - -
Vium8966g00004 580 Pfam BTB/POZ domain 329 434 IPR000210 GO:0005515
Vium8966g00004 580 Pfam BTB/POZ domain 161 258 IPR000210 GO:0005515
Vium8966g00004 580 ProSiteProfiles BTB domain profile. 331 407 IPR000210 GO:0005515
Vium8966g00004 580 MobiDBLite consensus disorder prediction 558 580 - -
Vium8966g00004 580 Gene3D Potassium Channel Kv1.1; Chain A 301 470 IPR011333 -
Vium8966g00004 580 Gene3D Potassium Channel Kv1.1; Chain A 156 277 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8966g00004 Vium-Chr8966 44520 52133 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8966g00004 BTB 6.6e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8966g00004 K10520 - gmx:100812009 937.176