Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8966g00003 ATGACATTGGTTGACGAGGTGGAGGTGGAAGTGGATGTGGAGGTGGAGGCGTCGGTGCCAGTAAAGAAGGTGCCGTACGGTGACATATTCGAGGCGTCCCGCGCTGGCGACGTGGAGCGGCTCCGGTACCTGCTGGAGACAGGCGTGAACGTCAACGCGCGGGACCAGTGGGACTCGGTGGCCCTCTACTACGCCTGCTTGGTCGGCCACCTCGACGCTGCTCGAATGCTCCTCGAAAACGGCGCCATCTGCTCCGAACACACCTTTGATGGCGACCGCTGCCACTATGCCGCCCTCAATCTCAAGGTCCGGAAACTCCTTAAGGCATTTGAGGCGCGGCCACCGCCCTTGGAACCCTTACAGGCTGCTTTGCGTGACACCTTCCTCGCTTGTGTTTCATCCACTCAGGGGTCCATTTGCTGCCACTTCCCTCCAGATGTAGTATTTATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCAAGATCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCAAAGGAAAAATTGTCATATCCTGCACTTTATAGCCTTGTACACTTCTTTTATTCAGACAGATTAGAGATTGCCATTGATGATATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTGCATAAAGTTATTGAGAAAGAACTAATTCATCAAAAATATGCAGACTATAAATCGTTGGGAAATGTAGATAATTCTCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCAACCCATGAAAGTGGTCAAGAAGATAAATTGGTTTCTATGATGGATGCCATGCAGATGGCCAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGAAATATTTTCCGCTGTCATCAAGTTATTCTAGCATCCAGGTCAGAATACTTCAGAGCAAGATTATCACATATGAAGAACTTCAATGAGGGGAAACATGACTTATCTGTTGACACTCTTCCTTGTGTAGAAGAACATGACTTAAGCAAGGAAGCCTTTGAGAAAATGATTGAATATATGTACACTGATCGTTTGCAGGACATAAATCCAGATCAGGCTGAAGAAATGTTTGATGTTGCTTCTAGATATTTATTGTTTCCTCTCAAGCGTGCAGTCGCTGATGTCTTGTTGCCACACTTGGAAATGGTTTCACTTGATGAACATTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTTGACACCATTGCTTGCAATTTTGAAACTTTTGCTGATAGTAAAGAGTTCCGGGCAATGTTGCTGACTTTGCCTCCACCATCTGGAGACTCGTCCCTTCGTACCACTGTCCCTAGTATTCCTGGATCTTCTCTTAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGCAATTGAAGCGGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGACTAGAGATGCTTATGCTTGTTGCAGAGCAAGAACAATCATCAGATAATGCTGATTCCGATTACACTAGTGCATTTCTTCCCAATCACTACCCTGATTTAAAGTGA 1692 0.4415 MTLVDEVEVEVDVEVEASVPVKKVPYGDIFEASRAGDVERLRYLLETGVNVNARDQWDSVALYYACLVGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLEPLQAALRDTFLACVSSTQGSICCHFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSKEKLSYPALYSLVHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVIEKELIHQKYADYKSLGNVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTHESGQEDKLVSMMDAMQMAKSVDDLADVCVKVDRNIFRCHQVILASRSEYFRARLSHMKNFNEGKHDLSVDTLPCVEEHDLSKEAFEKMIEYMYTDRLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSLDEHCHWLILADMYGVFKIREYCLDTIACNFETFADSKEFRAMLLTLPPPSGDSSLRTTVPSIPGSSLNTDQGNLLDDLREKWLAIEAAELDKRDESALQFDKRLEMLMLVAEQEQSSDNADSDYTSAFLPNHYPDLK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8966g00003 563 SMART BTB_4 314 421 IPR000210 GO:0005515
Vium8966g00003 563 SMART BTB_4 145 242 IPR000210 GO:0005515
Vium8966g00003 563 MobiDBLite consensus disorder prediction 541 563 - -
Vium8966g00003 563 FunFam BTB/POZ domain-containing protein 23 141 - -
Vium8966g00003 563 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Vium8966g00003 563 SUPERFAMILY POZ domain 142 240 IPR011333 -
Vium8966g00003 563 Gene3D Potassium Channel Kv1.1; Chain A 283 453 IPR011333 -
Vium8966g00003 563 CDD BACK 430 468 - -
Vium8966g00003 563 ProSiteProfiles BTB domain profile. 145 212 IPR000210 GO:0005515
Vium8966g00003 563 SUPERFAMILY Ankyrin repeat 30 107 IPR036770 -
Vium8966g00003 563 ProSiteProfiles BTB domain profile. 314 390 IPR000210 GO:0005515
Vium8966g00003 563 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 16 537 IPR044515 -
Vium8966g00003 563 Pfam BTB/POZ domain 312 417 IPR000210 GO:0005515
Vium8966g00003 563 Pfam BTB/POZ domain 143 241 IPR000210 GO:0005515
Vium8966g00003 563 Gene3D Potassium Channel Kv1.1; Chain A 143 243 IPR011333 -
Vium8966g00003 563 FunFam BTB/POZ domain-containing protein 140 261 - -
Vium8966g00003 563 SUPERFAMILY POZ domain 299 420 IPR011333 -
Vium8966g00003 563 Gene3D - 29 142 IPR036770 -
Vium8966g00003 563 CDD BTB_POZ_ZBTB_KLHL-like 313 404 - -
Vium8966g00003 563 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8966g00003 Vium-Chr8966 44520 52133 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8966g00003 BTB 6.3e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8966g00003 K10520 - gmx:100812009 959.903