Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium895g00004 ATGAAGAAAAAAGCAAAAACCAAAGAAGATGAGCATGTTGAATTCTCTGTGTATTTGCTGCAGACACTTCTTCCACATTTAAGATTGTTGGATGAAGAACAAATGATTGAGAATGAAACAGAAGCTAAGATACAGGGTATCTCAATCTCTGAGCTTAGAGTAAAAGATGCAGTATATTCTAAGGACGAGCGAGTATATTGTGATAATTGTAAAACGTCAATATTTGATTACCACAGAAGCTGTACACTATGCACATTCGATCTTTGTCTCATCTGTTGTCGTGAGCTTCGTAGTGGGCAGCTTTTAGGTGAAGAAGTAGTAAATAAAAGGGTAAACGAAACTGAATCAAACGATGTTGCTGAACCTGTAGTTCGTGAATGGTCAAGATTTGGATGGCATGCCGAAAGTAATGGTAGAATTCCTTGTCCAAAAGTTAGTGATGAATGTAACCATGGTTTTCTAGAACTCAGAACCATGTTAGGTCAAAATTTTATTACTGATTTATTGTGTAAAGCAAATGAACTAGCACAACGACACGAACTTGGGACACTTGACAACTTCTGTACGTGTTCAAGGCTTGACAGAAAAACAGATGTTAGATATCATGGTATGAGGAAGGCTGCATCACGTGCATATTCTAGTGACAACTATTTGTACTGTCCTAGGGCTGTACAACCCCAGGATGAGGATTTAGGACATTTTCGATGGCATTGGAAAAATGGAGAGCCTGTTATTGTTAGCCATGCGATTGATAGTACTTCTGGTTTAAGCTGGGAACCATCTGTCATGTCTCGTGCATTGTGTCAGATAGCTAAGAGCACGCATCCACAACATTTGGATATGAAGGCAATTGATTGCTTAGATTTGTGCGAGGTTCAAATTAAGATCGAGGAATTTTTTACTGGGTATAAAGAAGGTCGTGTGGATTGCCTTGGTCGACCTCGCATGTTGAAATTAAAAGACTGGCCATCTACTAATTTATTAGAGGAATGCTTACCTCGACATTGTGCCGAGTTCATATCTTCCTTACCATTCAAGGAATATACTGATCCATTTGGAGGTTGTTTCAACCTAGCTGCGAAATTGCCTGAAGAGTGTCTAAAACCAGACTTGGGGCCGAAGACATATATTGCCTATGGATTCCCTCATGAGCTTGGACGTGGTGATTCTGTAACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACGCATATAGCTGAAGTTAAATTGGAAGCGAAGTATCTTACTGGCATTGAGAATTTGAAAGAAAAGCAGTTGGAGCAAGAGCAAAGGGAGCTACTGAGTGTTGGTAGTGATGGTTCAGATGGTGCAGTGTGGGATATTTTTCGGAGGCAGGACGTACCTAAATTGCAGGAGTATCTGAGGAAACATTTCAGAGAGTTTAGGCATATCCATTGTCGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTGTGGAGCACAAGAGGAAGCTAAAGGAGGAGTATGGAATTGAACCCTGGACATTTATTCAGAAGCTAGGAGAAGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTTAGAAATCTCAAGTCGTGTAATAAGGTTGCAATGGATTTTGTTTCTCCTGAAAGTGTTGGGGAGTGTTTTGGTTTAACCGAGGAATTTCGTACACTTCCAATAAATCATGGGTGTGCTGAGGACAAATTGGAGGTGAAAAAGATGACAATATATGCTATGCAAGATGTGATAAGAAAATTGGAAAGAGCGAGGTTAGCAGACAAGGGACCGGTGAAAGTGTAA 1812 0.404 MKKKAKTKEDEHVEFSVYLLQTLLPHLRLLDEEQMIENETEAKIQGISISELRVKDAVYSKDERVYCDNCKTSIFDYHRSCTLCTFDLCLICCRELRSGQLLGEEVVNKRVNETESNDVAEPVVREWSRFGWHAESNGRIPCPKVSDECNHGFLELRTMLGQNFITDLLCKANELAQRHELGTLDNFCTCSRLDRKTDVRYHGMRKAASRAYSSDNYLYCPRAVQPQDEDLGHFRWHWKNGEPVIVSHAIDSTSGLSWEPSVMSRALCQIAKSTHPQHLDMKAIDCLDLCEVQIKIEEFFTGYKEGRVDCLGRPRMLKLKDWPSTNLLEECLPRHCAEFISSLPFKEYTDPFGGCFNLAAKLPEECLKPDLGPKTYIAYGFPHELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEAKYLTGIENLKEKQLEQEQRELLSVGSDGSDGAVWDIFRRQDVPKLQEYLRKHFREFRHIHCRPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKLGEAVFIPAGCPHQVRNLKSCNKVAMDFVSPESVGECFGLTEEFRTLPINHGCAEDKLEVKKMTIYAMQDVIRKLERARLADKGPVKV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium895g00004 603 ProSiteProfiles JmjC domain profile. 351 560 IPR003347 -
Vium895g00004 603 Pfam JmjC domain, hydroxylase 441 543 IPR003347 -
Vium895g00004 603 SMART cupin_9 332 560 IPR003347 -
Vium895g00004 603 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3 595 IPR045109 GO:0032454|GO:0033169
Vium895g00004 603 SUPERFAMILY Clavaminate synthase-like 230 582 - -
Vium895g00004 603 Gene3D Cupin 214 569 - -
Vium895g00004 603 FunFam Transcription factor jumonji domain-containing protein 215 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium895g00004 Vium-Chr895 135367 139659 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium895g00004 JmjC 2.5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium895g00004 K15601 - vvi:100261347 679.863