Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium895g00003 ATGACGAACCGTAATGTGAATAAGACGATCGTGGAGTTGGCAATGTCGATTTCAAACTCAGGTGCTCTACCTAGAGCTGCAGTGCCTGGAATAATGGCTTTGCTTTGTGGGGTTTTAGGTCTACCCCAGAAAAAGCTGTTTTTGAAAAGTTTGGAGGATGGAAGTGGAAAAGGAGGAACCAAAGTTAACACATGGATTGATTCAATGAGAGCTTCTTCTCCCACTCGAGTCAAATCCACACAGAACCAAGACCCCAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAACCTGTTTGATCAGATTGTATGTGAGTCCAAAGGGAAGCAGATTGTCACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATACATGAGTCAAAAGATGAGGGCCACACTCAAGGACATAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCATAGACAAGGTTTATTGCTTTGTGAGATTGGGTGAACTGTACTATGCTGGGAGCCATGGGATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAACGAAGCAGTACTCTTCCAACCCGCTAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGATAAAACAAAGTCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGTTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTTAGCTTGGTCCTCGATCAATACCCCAAACTAAAGCTAACTCAAGGAAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAATCACTTGGATATGGTAACTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGGAAGAGGGGTCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACCGATGCTTCCTACACTCTGCAAGATCCAACTGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTACCCAATACCACAAGTTGTAG 1110 0.4414 MTNRNVNKTIVELAMSISNSGALPRAAVPGIMALLCGVLGLPQKKLFLKSLEDGSGKGGTKVNTWIDSMRASSPTRVKSTQNQDPSPWTLYHPSALNLFDQIVCESKGKQIVTFLDYDGTLSPIVADPDKAYMSQKMRATLKDIARHFPTAIVSGRCIDKVYCFVRLGELYYAGSHGMDIKGPTNRRSTKKGNEAVLFQPASEFLPMINEVYNILVDKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEQVSLVLDQYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYGNSDNVFPIYIGDDRTDEDAFKVLRKRGQGIGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSTQYHKL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium895g00003 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 55 367 IPR044651 GO:0004805|GO:0005992
Vium895g00003 369 FunFam Trehalose 6-phosphate phosphatase 201 277 - -
Vium895g00003 369 NCBIfam trehalose-phosphatase 109 357 IPR003337 GO:0003824|GO:0005992
Vium895g00003 369 NCBIfam HAD-IIB family hydrolase 114 321 IPR006379 -
Vium895g00003 369 Pfam Trehalose-phosphatase 114 346 IPR003337 GO:0003824|GO:0005992
Vium895g00003 369 Gene3D - 111 195 IPR023214 -
Vium895g00003 369 Gene3D - 228 368 IPR023214 -
Vium895g00003 369 SUPERFAMILY HAD-like 114 360 IPR036412 -
Vium895g00003 369 FunFam Trehalose 6-phosphate phosphatase 207 366 - -
Vium895g00003 369 CDD HAD_TPP 114 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium895g00003 Vium-Chr895 88767 91509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium895g00003 107 364 Trehalose Biosynthesis Gene Families AT1G06410 26.374 4.23e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium895g00003 K01087 - gmx:100792915 674.855