Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8950g00005 ATGGTTGAACCTGTAGAAGACGTGAATGAGTTTGGTTTATGGAATGAACCCAAACCAGTCATTTACACCCGAATCTCATTCCTCTGGTTTTTTTTTTTTTGGCCCTTCTGCCCCTTGTGTTATAGTTTTAGTCAATCACTTACTTTTAACAACTCACCATACAATGAGACTGAGGATTCACTGGAACTAGTGGATTATGCTGATGAAGAGACCTTTAAGGACATTAAAGAATCCTCCTTTGTCGAAGAGTCTTTGAAAGATGAAGACGGGAATATCTCAAAAACCCAAAGAGTTAGCATTGAAGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGTGCATTTGCTAAAGTATATCAGGTGAGGAAGAAAGGTACTTCAGAAATTTATGCTATGAAGGTTATGCGGAAGGACAAGATTATGGAGAAGAACCATACTGAATACATGAAAGCTGAGAGGGATATCTGGACAAAGATAGAACACCCTTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGACTGTATCTTGTGCTTGATTTTGTAAACGGGGGCCATCTCTTCTTCCAGCTTTATCACCAAGGCCTTTTTAGAGAGGATCTAGCACGCATATATGCTGCGGAGATTGTTTCTGCAGTTTCTCATCTTCATTCAAATGGAATAATGCACAGGGATCTGAAGCCTGAAAATATTCTACTGGACGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAGAGTACTAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCCCCTTTCTGTGGTGGTAGCCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATCAAGCTACCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGCGCTGCTACAGAAGGAAGCAACGAAGCGCTTAGGTTGTGGAGCCCGGGGAGTTCAGGAAATTAAGGGACACAAGTGGTTTAAACAAATCAATTGGAGAAAGCTGGAAGAACGAGAAATCCAGCCAAGCTTTATCCCAGACGTAGCTGGTACGCACTGTGTTGCCAACTTTGAGAAACGCTGGACTGATATGCCTGTTGTGGACTCGCCAGCTGCCAGCCCAAATGGTGGAAACCCCTTTAAGGACTTCTCTTACGTGAGGCCTGCACCTTCTTTTCTTCAGAGGAATAGCCCTGCGTACTAA 1299 0.4226 MVEPVEDVNEFGLWNEPKPVIYTRISFLWFFFFWPFCPLCYSFSQSLTFNNSPYNETEDSLELVDYADEETFKDIKESSFVEESLKDEDGNISKTQRVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHTEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGSRDKIQQKIVKDKIKLPAFLSSEAHSLLKALLQKEATKRLGCGARGVQEIKGHKWFKQINWRKLEEREIQPSFIPDVAGTHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAPSFLQRNSPAY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8950g00005 432 Pfam Protein kinase domain 103 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00005 432 FunFam Non-specific serine/threonine protein kinase 183 378 - -
Vium8950g00005 432 SUPERFAMILY Protein kinase-like (PK-like) 100 422 IPR011009 -
Vium8950g00005 432 ProSiteProfiles Protein kinase domain profile. 103 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00005 432 FunFam Non-specific serine/threonine protein kinase 100 206 - -
Vium8950g00005 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vium8950g00005 432 SMART serkin_6 103 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00005 432 ProSiteProfiles AGC-kinase C-terminal domain profile. 360 427 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium8950g00005 432 CDD STKc_AGC 109 359 IPR045270 GO:0004674|GO:0005524
Vium8950g00005 432 Gene3D Transferase(Phosphotransferase) domain 1 183 378 - -
Vium8950g00005 432 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Vium8950g00005 432 SMART pkinase_C_6 360 419 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium8950g00005 432 Gene3D Phosphorylase Kinase; domain 1 100 400 - -
Vium8950g00005 432 PANTHER RIBOSOMAL PROTEIN S6 KINASE 59 421 - -
Vium8950g00005 432 Pfam Protein kinase C terminal domain 382 417 IPR017892 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8950g00005 Vium-Chr8950 6719 14334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8950g00005 44 429 AGC Kinase Gene Family AT3G08720 72.494 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vium8950g00005 Pkinase 3.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8950g00005 K04688 - gmx:100805922 716.842