Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8950g00004 ATGGCTTCTCTGCTTCCTACAACTACAACAACACTTCAACTTAATCGTACCATCTGCTTCTCTCCTCTCAAACTCAGCATCCCAATTGCCATTTCCTTTTCGACAAACCGTTTCAAGAGTACCTCTGCAAAGTGTAATGCAGTTTTTGGTGATATTCCCAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTAAAGTTTCAGCATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGATACTTGCCGGGCTGACATGGGCCTATTTAACTGCGAGGCCGGGTGTCCTTGTTGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGGTTTTGGACAGTTTATCTGGAAGAAGAAATCTTAAGAGGACTGATTTTCTTATTGGAGATAAACTAGGAGAAGGTTCTTTTGGTGTTGTTTATTCAGGTGTTTTCGTCCCAAAGAATGTAGATGCACAAGAGTTGATGCAAAAAAATGGAAGAGGCAAGGTGAAAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACGTGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACGAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCTGATTACATGACTGATCAAAACTTCCCATCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGCAGGGTGTAGACTCTTCTAAACGAAATGCATTAATCGTCAAGCAAATAATGCGCCAGATCATTTCTTCTCTTAAAAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGAGGGCAGATTAAACTCATCGATTTTGGTGTTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTAACCCCTTGGACCGTGACTACTGCCCGCCTGAACTGTATGTTCTACCCGAAGAAACTCCGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTATTCCTGCAAGTAGCAATTCCAACCTTAAGATCTTCAGTTGCTTTGAAGAATTTCAATTTGGAGATAAGAACTTGTGGATATGATTTGAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGTTCACAATTAAGAGGACGTTTTTCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCCGCCGCAGTCCTTTCAAAACTAAGCTTTTAA 1497 0.4222 MASLLPTTTTTLQLNRTICFSPLKLSIPIAISFSTNRFKSTSAKCNAVFGDIPKDLLETTFHLDQFSVFQSVLVKFQHVTEDLSDVQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVFVPKNVDAQELMQKNGRGKVKKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMTDQNFPSNLESTMFGRVLQGVDSSKRNALIVKQIMRQIISSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGVATDLRIGKNYVPNRNPLDRDYCPPELYVLPEETPSLPPEPIAAFLSPIMWQLKSPDLFDMYSAGIVFLQVAIPTLRSSVALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRFSAAAALRHPYFLLGGDQAAAVLSKLSF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8950g00004 498 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 497 - -
Vium8950g00004 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Vium8950g00004 498 Gene3D Transferase(Phosphotransferase) domain 1 278 484 - -
Vium8950g00004 498 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00004 498 SUPERFAMILY Protein kinase-like (PK-like) 136 483 IPR011009 -
Vium8950g00004 498 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00004 498 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00004 498 Gene3D Phosphorylase Kinase; domain 1 127 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8950g00004 Vium-Chr8950 1092 5865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8950g00004 139 338 MAP Kinase Kinase Kinase AT3G13530 25.616 3.44e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vium8950g00004 Pkinase 2.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8950g00004 - - gmx:100795624 842.032