Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8950g00003 ATGGCTTCTCTGCTTCCTACAACTACAACAACACTTCAACTTAATCGTACCATCTGCTTCTCTCCTCTCAAACTCAGCATCCCAATTGCCATTTCCTTTTCGACAAACCGTTTCAAGAGTACCTCTGCAAAGTGTAATGCAGTTTTTGGTGATATTCCCAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTAAAGTTTCAGCATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGATACTTGCCGGGCTGACATGGGCCTATTTAACTGCGAGGCCGGGTGTCCTTGTTGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGGTTTTGGACAGTTTATCTGGAAGAAGAAATCTTAAGAGGACTGATTTTCTTATTGGAGATAAACTAGGAGAAGGTTCTTTTGGTGTTGTTTATTCAGGTGTTTTCGTCCCAAAGAATGTAGATGCACAAGAGTTGATGCAAAAAAATGGAAGAGGCAAGGTGAAAAAGTTGGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGAATGTGCAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACGTGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACGAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCTGATTACATGACTGATCAAAACTTCCCATCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGCAGGGTGTAGACTCTTCTAAACGAAATGCATTAATCGTCAAGCAAATAATGCGCCAGATCATTTCTTCTCTTAAAAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGAGGGCAGATTAAACTCATCGATTTTGGTGTTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTAACCCCTTGGACCGTGACTACTGCCCGCCTGAACTGTATGTTCTACCCGAAGAAACTCCGAGTCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTATTCCTGCAAGTAGCAATTCCAACCTTAAGATCTTCAGTTGCTTTGAAGAATTTCAATTTGGAGATAAGAACTTGTGGATATGATTTGAACAAATGGAGAGCGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGTTCACAATTAAGAGGACGTTTTTCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGGGATCAGGCCGCCGCAGTCCTTTCAAAACTAAGCTTTTAA 1506 0.4223 MASLLPTTTTTLQLNRTICFSPLKLSIPIAISFSTNRFKSTSAKCNAVFGDIPKDLLETTFHLDQFSVFQSVLVKFQHVTEDLSDVQRWGFVILAGLTWAYLTARPGVLVGAIDAFLLAPIQLVLDSLSGRRNLKRTDFLIGDKLGEGSFGVVYSGVFVPKNVDAQELMQKNGRGKVKKLDAKSKDKVILKKNVQVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMTDQNFPSNLESTMFGRVLQGVDSSKRNALIVKQIMRQIISSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGVATDLRIGKNYVPNRNPLDRDYCPPELYVLPEETPSLPPEPIAAFLSPIMWQLKSPDLFDMYSAGIVFLQVAIPTLRSSVALKNFNLEIRTCGYDLNKWRASTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRFSAAAALRHPYFLLGGDQAAAVLSKLSF 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8950g00003 501 Pfam Protein kinase domain 292 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00003 501 Gene3D Transferase(Phosphotransferase) domain 1 281 487 - -
Vium8950g00003 501 Gene3D Phosphorylase Kinase; domain 1 127 252 - -
Vium8950g00003 501 SUPERFAMILY Protein kinase-like (PK-like) 137 486 IPR011009 -
Vium8950g00003 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 47 500 - -
Vium8950g00003 501 SMART serkin_6 139 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00003 501 ProSiteProfiles Protein kinase domain profile. 139 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8950g00003 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8950g00003 Vium-Chr8950 1092 5868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8950g00003 139 341 MAP Kinase Kinase Kinase AT3G13530 25.728 5.70e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vium8950g00003 Pkinase 2.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8950g00003 - - gmx:100795624 852.047