Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8946g00007 ATGTCCTTCCACTCAAATACCCCAGTCGCATTGATTTGTTATCAACCCACCGACTTCATTGGAACACCCTTTTCTCCTTCAATGGAAGGTGAGGAGGGAAAAGAGTGCTCTCAAAACCCTTACGTTGAACTAGAAGAAGTTGACTTCGATTTTATTCTAGCATTGAGCATGCAGGAACACGAGAGAGAGTTCACAATGCTTTCAACCATTGAAAGTGAAAATGATGAATATCTGAGTGACTCCTCTATTGATAATGATGATGACGGTGATCCTAACTTCGTAGAGAGTCAAGAGTTTGACTCTGATCTTCAGTTTCTTGAAGATGAAGAAAGCAATGATAACGATGATGATGATGAAGAAGAAGAAATGGAAGTGGAAGAAGATGAGATTGATCCAGACGAATTATCTTATGAAGAGTTGATGGAGTTGGGAGAGTTTATAGGAGAAGAAACGAGGGGATTATCCGCAAATGAAATCTCTATGTGCTTGAACTCTTATACTTGGCAACGTGGTGAAAGAAAAAGTGGAATCGATCGCTGTGTGATTTGTCAGGTTGAATATGAAGATGATGAAGCATTGGTGGCACTTCAATGTGAGCACCTTTATCATGCAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCCATTTGTAGCAATGAAGTTTCAACTCCAAACATGGCTTCCAACACTTAA 702 0.3974 MSFHSNTPVALICYQPTDFIGTPFSPSMEGEEGKECSQNPYVELEEVDFDFILALSMQEHEREFTMLSTIESENDEYLSDSSIDNDDDGDPNFVESQEFDSDLQFLEDEESNDNDDDDEEEEMEVEEDEIDPDELSYEELMELGEFIGEETRGLSANEISMCLNSYTWQRGERKSGIDRCVICQVEYEDDEALVALQCEHLYHADCISKWLQIKKVCPICSNEVSTPNMASNT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8946g00007 233 SMART ring_2 180 220 IPR001841 -
Vium8946g00007 233 Pfam Ring finger domain 179 220 IPR001841 -
Vium8946g00007 233 MobiDBLite consensus disorder prediction 75 133 - -
Vium8946g00007 233 FunFam E3 ubiquitin ligase BIG BROTHER-related 146 227 - -
Vium8946g00007 233 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 118 228 IPR043312 -
Vium8946g00007 233 MobiDBLite consensus disorder prediction 77 133 - -
Vium8946g00007 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 230 IPR013083 -
Vium8946g00007 233 SUPERFAMILY RING/U-box 179 227 - -
Vium8946g00007 233 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8946g00007 Vium-Chr8946 57937 58824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8946g00007 127 224 C3H Transcription Factor Family AT3G63530 50.495 1.57e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8946g00007 K19045 - gmx:100526881 303.908