Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8946g00006 ATGGCATCAGAGTTTCAATTGCCCCCAGGCTTCAGATTCCATCCAACGGACGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCGCCTCGCAGCCCATCGCCGTTCCCATCATCGCCGAAATCGACCTCTACAAATACGACCCTTGGGACCTTCCCGGATTGGCTTCTTATGGAGAGAAAGAGTGGTACTTCTTTTCACCACGGGACCGGAAGTACCCAAACGGTTCGAGGCCGAATCGGGCGGCGGGAACCGGTTACTGGAAGGCAACCGGGGCAGATAAGCCCATTGGTCACCCGAAAGCGGTTGGGATCAAGAAAGCTTTGGTGTTTTACGCTGGGAAAGCTCCGAAAGGGGACAAAAGCAATTGGATCATGCACGAGTATCGTCTGGCTGATGTAGATCGGTCCGTTCGCAAAAAGAACAGCCTAAGGTTGGATGATTGGGTGCTGTGCCGTATCTACAACAAGAAGGGCACGATCGAGAAATTACAACCGAGCAGTGATCCAGTTGTGACCCGGAAAATCGAATCCCCGGAGATCGAAGAGAAGAAGCCGGAGATTCTGAAAAGCGGAGGAGTTCTTCCGCCGGCGCCGCCGATGACTGACTACATGTACTTCGATCCGTCGGATTCAATCCCGAAGCTACACACGGACTCGAGCTGCTCAGAGCAGGTGGTTTCGCCGGAATTCGCCAGCGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAGAAGAGCCTGGAGTTTCCATTCTACATGGATACCACTCTGAGCAACGGCTTCACCCAATTCGCGAGCAATAACAATAACACCAACAATAATAATCAGATGTCGCCGCTGCAGGACATGTTCATGTACTGGCCCAAGCCCTTTTGA 879 0.5324 MASEFQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGHPKAVGIKKALVFYAGKAPKGDKSNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKLQPSSDPVVTRKIESPEIEEKKPEILKSGGVLPPAPPMTDYMYFDPSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKSLEFPFYMDTTLSNGFTQFASNNNNTNNNNQMSPLQDMFMYWPKPF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8946g00006 292 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Vium8946g00006 292 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vium8946g00006 292 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Vium8946g00006 292 FunFam NAC transcription factor 16 161 - -
Vium8946g00006 292 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Vium8946g00006 292 PANTHER NAC TRANSCRIPTION FACTOR 56 7 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8946g00006 Vium-Chr8946 40332 42458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8946g00006 1 292 NAC Transcription Factor Family AT1G01720 71.287 1.00e-146 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium8946g00006 NAM 5.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8946g00006 - - gmx:100805768 520.39