Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium8946g00005 | ATGACGACCCATCTCATGGAAATCGACAGCGATAGCGATGACCAGACAAACTCCGCCGGGGAAAATGACATACTTGCCGCAGACCTTACTGACCTCGGCAAGGCCATTCCGTGGGTTGAAAAATACCGCCCTCAGTCTCTCGACGACGTCGCCGCTCACCGTGACATTGTTGATACCATTGATAGGCTGACTACAGAGAACAGATTGCCGCATCTTTTATTGTATGGCCCTCCTGGAACGGGTAAAACATCGACCATTCTCGCTGTGGCACGCAAACTATATGGTCCACGCTTCCAAAATATGATTTTGGAGCTCAATGCATCAGATGACAGAGGAATTGAGGTCGTGAGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTTAAGTCCTCTGTAAAGCTCGTGTTGTTGGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCTCTTATCTGTAATCATGTAAACAAGATTATTCCTGCACTTCAATCTAGATGCACTCGATTTCGATTTGCCCCTCTTGACGCCGTCCATGTCACTGAAAGACTGAAACACGTTATTAAGGCTGAAGGGCTTGATGTTGAAGACGATGGCTTAGCTGCCCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTAAATATTCTTCAGTCAACACATATGGCTACTAACCAGATAACTGAAGAAGTTGTTTACCTTTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTACTGGCTTCTAAACGAACAATTTGCAGATAGCTTTAAAAGAATAGATGAAATGAAGACCAGGAAAGGGTTGGCCCTGGTTGATATTATCAGAGAAGTGATCATGTTTGTTTTTAAGATTAAGATGCCTTCAGCTGTTCGAGTACAATTGATGAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGATAAGCTTCAGCTTGGATCGGTCATTGCTTCTTTTACACGTGCTAGATCTGCACTGGTAGCTGCTGCCACATAG | 1080 | 0.4333 | MTTHLMEIDSDSDDQTNSAGENDILAADLTDLGKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPRFQNMILELNASDDRGIEVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDDGLAALVRLSNGDMRKALNILQSTHMATNQITEEVVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDIIREVIMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAT | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium8946g00005 | 359 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 37 | 341 | - | - | |
| Vium8946g00005 | 359 | FunFam | Replication factor C subunit 5 | 197 | 259 | - | - | |
| Vium8946g00005 | 359 | FunFam | Replication factor C subunit 5 | 31 | 195 | - | - | |
| Vium8946g00005 | 359 | Pfam | ATPase family associated with various cellular activities (AAA) | 72 | 192 | IPR003959 | GO:0005524|GO:0016887 | |
| Vium8946g00005 | 359 | CDD | AAA | 56 | 194 | - | - | |
| Vium8946g00005 | 359 | CDD | HLD_clamp_RFC | 195 | 257 | - | - | |
| Vium8946g00005 | 359 | Pfam | Replication factor C C-terminal domain | 260 | 346 | IPR013748 | - | |
| Vium8946g00005 | 359 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 260 | 350 | IPR008921 | GO:0003677|GO:0006260 | |
| Vium8946g00005 | 359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 36 | 253 | IPR027417 | - | |
| Vium8946g00005 | 359 | FunFam | Replication factor C subunit 5 | 260 | 357 | - | - | |
| Vium8946g00005 | 359 | SMART | AAA_5 | 68 | 198 | IPR003593 | GO:0016887 | |
| Vium8946g00005 | 359 | Gene3D | - | 260 | 357 | - | - | |
| Vium8946g00005 | 359 | Gene3D | - | 198 | 259 | - | - | |
| Vium8946g00005 | 359 | Gene3D | - | 31 | 194 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium8946g00005 | Vium-Chr8946 | 20244 | 28288 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium8946g00005 | 3 | 358 | Core DNA Replication Machinery Family | AT1G77470 | 76.712 | 0.0 | 569 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium8946g00005 | K10756 | - | gmx:100782652 | 628.632 |