Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8944g00001 ATGTCTTATACGCTTAAACATGCATTCTCTCATTCACTTACTCTTCTAGCTTCCTTTTCAATACTCTTAGTGGTCCCTTCCTCTTGTTTCAACCCTAAAAAGATTGTTAATGCTTCAATTCATTCATACTCTTCAGATGCTTCATGGTCATCTGCTGTGGCTACTTGGTATGGACCTCCCAATGGGGATGGAAGTGAAGGTGGTGCTTGTGGTTATGGCAGAACTGTTGGGGAACCTCCATTCTCATCAATGATAGCTGCAGGAAGCCGTCCTTTGTTTGATTCAGGCAAAGGCTGTGGTTCTTGTTACGAGGTGAAGTGCACAGGGAATAAAGCATGCTCAGGCAACCCTGTGAGGGTAGTCATCACAGATAACTGTCCTGATTGTGGTTCTGACGCACATTTTGATATGAGTGGCGCTGCTTTTGGTCACATGGCAGTTTCAGGTCAAGCCGATCAACTACGCAATGTTGGCAGAATAGCCATTCAATACAACAGGGTTGCATGCAACTACGGTAGGTCAATAGTTTTCCATGTGGACTCTGGATCGAACCAAGATTATTTAGCAGTGATGGTTGAATATGAAGATGGAGATGGTGAACTTGAGAGAGTTGAAGTGAAGGAAGCATCTTCAGCGTCATGGGAAGCCATGGAAAAATCTTGGGGTGCAGTTTGGAAATATAACAAACGGTCACAACTGAAAGCACCATTCTCTATAAGGCTAACCAACTTTGAGTCCAAGACTATTGAGGCTAGCAATGTCATCCCTGCTGGCTGGACACCTGGTAGTTCTTATGTATCCAATGTTAATTTTTGA 816 0.4375 MSYTLKHAFSHSLTLLASFSILLVVPSSCFNPKKIVNASIHSYSSDASWSSAVATWYGPPNGDGSEGGACGYGRTVGEPPFSSMIAAGSRPLFDSGKGCGSCYEVKCTGNKACSGNPVRVVITDNCPDCGSDAHFDMSGAAFGHMAVSGQADQLRNVGRIAIQYNRVACNYGRSIVFHVDSGSNQDYLAVMVEYEDGDGELERVEVKEASSASWEAMEKSWGAVWKYNKRSQLKAPFSIRLTNFESKTIEASNVIPAGWTPGSSYVSNVNF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8944g00001 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 267 IPR007117 -
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Vium8944g00001 271 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Vium8944g00001 271 SMART dpbb_1 85 164 IPR007112 -
Vium8944g00001 271 Gene3D - 32 170 IPR036908 -
Vium8944g00001 271 Pfam Expansin C-terminal domain 175 256 IPR007117 -
Vium8944g00001 271 SUPERFAMILY PHL pollen allergen 173 266 IPR036749 -
Vium8944g00001 271 SUPERFAMILY Barwin-like endoglucanases 41 171 IPR036908 -
Vium8944g00001 271 CDD DPBB_EXPB_N 55 169 - -
Vium8944g00001 271 Gene3D - 171 271 IPR036749 -
Vium8944g00001 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 174 IPR007112 -
Vium8944g00001 271 PANTHER EXPANSIN-B3 23 271 - -
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 87 98 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 124 139 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 243 260 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 PRINTS Major pollen allergen Lol pI signature 107 117 IPR005795 GO:0005576|GO:0019953
Vium8944g00001 271 Pfam Lytic transglycolase 86 164 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8944g00001 Vium-Chr8944 3186 5327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8944g00001 29 271 Expansin Gene Family AT1G65680 58.300 6.59e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8944g00001 - - gmx:548090 381.719