Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8937g00006 ATGGCTGGTGATTCTTCTGGAGACGTTGATCTAAGGTTGGGAGAACCTAAGGGGCCGAAACTGGAGCCCGAGACGGAGGAGGGTTCCGCGATACGTGTGATGCCGGTGGCTGTGCACGTGCCGTCAGGGATGTCCATGTCTGTGTCCAAGGCCCTGGCCCAAGCCCAGGCCCAACCTCAGAAACGGGCCTCCACTAAAGACCGTCACACCAAAGTCGAGGGGCGAGGCAGGAGGATCCGAATGCCCGCCACGTGTGCGGCGCGGATCTTCCAGCTCACCCGAGAGCTAGGTCACAAATCAGACGGTGAAACCATCCGTTGGCTCCTCGAACACGCCGAGCCCGCTATCATAGCCGCCACCGGCACCGGCACCGTCCCCGCCATCGCCATGTCTGTCAACGGCACGCTCAAGATTCCGACCACCTCTCCCTCCGACCCGGAACTCGGAGACCCACCGGAGAGGAAGAAGCGCAAGCGACCTGTAAACAGCGCCTACGTGGACGTAAACGACGGTGCCGTTTCAGTCCCCGCCGGCCTCGCGAGCTCGAACAAGCAAAGCTCAAGGACGATCACGACGACCGCCTCAACGACGACCCCAATTCCGCAGCACACCGCGATTCCGCTGCCGCAGGGCGTGGTCCCCGTGTGGGCCGTGCCTTCAAACGCTGTCGTTCCGACTGCAGGCGCGTTCTTCGTCGTCCCCCAAGCCGCGTCGTTTCAGCACCATCCGCAGTTTTTCACCATAGCACGACCAATCTCCGCGTTTGTCTCCTCCATGGTCACCCCCGTTCAACTCCAACCAACCTCCACATCCTCTTCTGCAAACGCTAACCCTTCCTCCACTGCGCCGTCGTCGAAGTCCCCGGCGAGAGCCACCGTCATGGCTCCCACCACCACCACCACAACACACATGCTGAGAGATTTTTCGTTGGAGATTTACGACAAACAAGAGTTGCAGTTCATGTCGCGCGCGTCTTCCAAGCATTGA 987 0.6069 MAGDSSGDVDLRLGEPKGPKLEPETEEGSAIRVMPVAVHVPSGMSMSVSKALAQAQAQPQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMSVNGTLKIPTTSPSDPELGDPPERKKRKRPVNSAYVDVNDGAVSVPAGLASSNKQSSRTITTTASTTTPIPQHTAIPLPQGVVPVWAVPSNAVVPTAGAFFVVPQAASFQHHPQFFTIARPISAFVSSMVTPVQLQPTSTSSSANANPSSTAPSSKSPARATVMAPTTTTTTHMLRDFSLEIYDKQELQFMSRASSKH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8937g00006 328 MobiDBLite consensus disorder prediction 10 27 - -
Vium8937g00006 328 ProSiteProfiles TCP domain profile. 65 119 IPR017887 -
Vium8937g00006 328 MobiDBLite consensus disorder prediction 135 163 - -
Vium8937g00006 328 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 287 IPR005333 GO:0003700
Vium8937g00006 328 MobiDBLite consensus disorder prediction 148 163 - -
Vium8937g00006 328 MobiDBLite consensus disorder prediction 266 300 - -
Vium8937g00006 328 Pfam TCP family transcription factor 64 158 IPR017887 -
Vium8937g00006 328 MobiDBLite consensus disorder prediction 1 30 - -
Vium8937g00006 328 MobiDBLite consensus disorder prediction 178 202 - -
Vium8937g00006 328 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8937g00006 Vium-Chr8937 49305 50911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8937g00006 21 327 TCP Transcription Factor Family AT2G45680 52.047 1.67e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium8937g00006 TCP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8937g00006 - - pvu:PHAVU_010G089100g 529.25