Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8929g00007 ATGCATAGGTTGCTAGTGGATTTGGGCAGGTGTATTGTTAGGGAAGAATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTATTAAATGGGACGATGTTATAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTCTGTTCGGTACGTGAACTTTTCGGGAAGTCTCAGTCATCTTTCGAATGAACTAGGATATCTTATTTGGAAGAGATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAGCCTGTATCAGAGCAGTATTAAACGACTGTGGGAAGGCACAAAGCCGTTACCCAATTTGAAGCGTTTGGATCTCTCTTTTTGCGAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAAGAGATAAATCTTGAAGGATGCGTAAAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAGAGCTTGTTCATTTGAATTTGAGAGACTGCAAAAAAGTAGTAATCTTATCCAATACTATATTGGGCCTGAGTTCTCTTAAATATCTGGATGTCAGTGGTTGTTCAATAATAGGTAGTAATTGTTTACTAGATGAAACAAGGAACACAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTCTCTTTTCCCTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTAGTTCAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAGAGAGGCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACATCAAGGACCTTTTGAGACTGCGTTTTTTAAACCTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTTAGAACCTTTCACGCTGTCGAGATTCCCATCTTCAATACTTGATTGGCCTGATTTTTTGACTGAGAAAGATACAGATATTAGATTTGCAGGATTAATCATTTTCGGCTGCCCAGAATTAGTTGAGATTGAACAGTGCACTACAAAGAGTTTTTCATGGGCAATTCAAATTCTTGAGGCGAACTACCACCACGCGACCTACCACCAGACGACCTACCAATGGCCATTCCCAGAAAGTATTATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATAGAATACCTGGACAAAGAAAACATAACCGTTGATCCACCTCCCATTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCCTAATATTTCGTCTAGACAATGAACAAATTCCAATGGATTTTAGAAGAGATCACATGTGGTTACATTATGAAAAGGTTTCTGTGGACGAACGTGGTATTAAACCTTTTAGTTTGTGTTGGACGTCGATTATCTCATTGTTGGATTACGACGATTTTGTTACGGCGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGATGCATTGTGCAAATTTGACAGCTCGGAAGCGCAAGATTTCTGTAATTGAGGAAAACGGTTAG 1617 0.3976 MHRLLVDLGRCIVREESPKEPIKWSRLWTRKDLHDAMSENEATRNLEAIVIKWDDVIDETIKADGLSKIKHLKLLSVRYVNFSGSLSHLSNELGYLIWKRYPFECLPQSFQPHKLVELSLYQSSIKRLWEGTKPLPNLKRLDLSFCESLVEMPDVAEALNLEEINLEGCVKLQKLNPSIGSLRELVHLNLRDCKKVVILSNTILGLSSLKYLDVSGCSIIGSNCLLDETRNTEHLISCLSPSSLFPCLRELDLSFCNLVQIPDYIGKLRCLERLNLEGNNFVKLPNIKDLLRLRFLNLQDCKRLKYLPDLPSRTVLPLEPFTLSRFPSSILDWPDFLTEKDTDIRFAGLIIFGCPELVEIEQCTTKSFSWAIQILEANYHHATYHQTTYQWPFPESIIPGSQIPSLFNNEFVNVDIEYLDKENITVDPPPIPHDNNFIGVLCCLIFRLDNEQIPMDFRRDHMWLHYEKVSVDERGIKPFSLCWTSIISLLDYDDFVTADVKKFQYRWVNEQDLINLKMMHCANLTARKRKISVIEENG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8929g00007 538 Gene3D Ribonuclease Inhibitor 227 387 IPR032675 -
Vium8929g00007 538 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 224 362 IPR044974 GO:0006952
Vium8929g00007 538 SUPERFAMILY L domain-like 60 318 - -
Vium8929g00007 538 Pfam Leucine Rich Repeat 208 225 IPR001611 GO:0005515
Vium8929g00007 538 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515
Vium8929g00007 538 Pfam Leucine Rich Repeat 248 263 IPR001611 GO:0005515
Vium8929g00007 538 Gene3D Ribonuclease Inhibitor 44 226 IPR032675 -
Vium8929g00007 538 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8929g00007 Vium-Chr8929 19093 21476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8929g00007 1 330 WRKY Transcription Factor Family AT4G12020 33.521 9.56e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8929g00007 - - vum:124847782 1090.49