Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8929g00004 ATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACTTTTTTAGATATTGCTTGCTTCTTCAATTCTTATCATGAAGAATGTGTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATAGAAGTTCTCATTGATAAATCACTCATTAGCAGAACTTTCCATGGGTTCATACATATGCATAGCTTGCTAGTGGATTTGGGCAGGTGTATTGTTCGGGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTATTAAATGGGACGATGTTATAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTCTGTTCGGTACGTGAACTTTTCGGGAAGTCTCAGTCATCTTTCGAATGAACTAGGATATCTTGTTTGGTCTGGATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAGCCTGTATCAGAGCAGTATTAAACGACTGTGGGAAGGCACAAAGCCGTTACCCAATTTGAAGCGTTTGGATCTCTCTTTTTGCGAAAGTTTAGTTGAGATGCCAGATGTAGCAGAGGCCCTAAATCTTGAAGAGATAAATCTTGAAGGATGCGTAAAGCTCCAAAAACTCAATCCATCGATTGGGAGTCTGAGAGAGCTTGTTCATTTGAATTTGAGAGACTGCAAAAAAGTAGTAATCTTATCCAATACTATATTGGGCCTGAGTTCTCTTAAATATCTGGATGTCAGTGGTTGTTCAATAATAGGTAGTAATTGTTTACTAGATGAAACAAGGAACACAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCGATCTAAGCTTCTGTAACTTAGTTCAAATTCCTGATTACATTGGAAAGTTACGTTGCTTAGAGAGGCTAAATTTAGAGGGAAACAATTTTGTTAAATTGCCTAACATCAAGGACCTTTTGAGACTGCGTTTTTTAAACCTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCTTGCCCTTAGAACCTTTCACGCTGTCGAGATTCCCATCTTCAATACTTGATTGGCCTGATTTTTTGACTGAGAAAGATACAGATATTAGATTTGCAGGATTAATCATTTTCGGCTGCCCAGAATTAGTTGAGATTGAACAGTGCACTACAAAGAGTTTTTCATGGGCAATTCAAATTCTTGAGGCGAACTACCACCACGCGACCTACCACCAGACGACCTACCAATGGCCATTCCCAGAAAGTATTATACCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATAGAATACCTGGACAAAGAAAACATAACCGTTGATCCACCTCCCATTCCGCATGACAATAATTTTATTGGTGTTTTGTGTTGCCTAATATTTCGTCTAGACAATGAACAAATTCCAATGGATTTTAGAAGAGATCACATGTGGTTACATTATGAAAAGGTTTCTGTGGACGAACGTGGTATTAAACCTTTTAGTTTGTGTTGGACGTCGATTATCTCATTGTTGGATTACGACGATTTTGTTACGGCGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACCTCAAAATGATGCATTGTGCAAATTTGACAGCTCGGAAGCGCAAGATTTCTGTAATTGAGGAAAACGGTTAG 1818 0.39 MDILRISYIQLEEKYKQTFLDIACFFNSYHEECVKEILNFRGFHPEDSIEVLIDKSLISRTFHGFIHMHSLLVDLGRCIVREVSPKEPIKWSRLWTRKDLHDAMSENEATRNLEAIVIKWDDVIDETIKADGLSKIKHLKLLSVRYVNFSGSLSHLSNELGYLVWSGYPFECLPQSFQPHKLVELSLYQSSIKRLWEGTKPLPNLKRLDLSFCESLVEMPDVAEALNLEEINLEGCVKLQKLNPSIGSLRELVHLNLRDCKKVVILSNTILGLSSLKYLDVSGCSIIGSNCLLDETRNTEHLISCLSPSSPLSCLCELDLSFCNLVQIPDYIGKLRCLERLNLEGNNFVKLPNIKDLLRLRFLNLQDCKRLKYLPDLPSRTVLPLEPFTLSRFPSSILDWPDFLTEKDTDIRFAGLIIFGCPELVEIEQCTTKSFSWAIQILEANYHHATYHQTTYQWPFPESIIPGSQIPSLFNNEFVNVDIEYLDKENITVDPPPIPHDNNFIGVLCCLIFRLDNEQIPMDFRRDHMWLHYEKVSVDERGIKPFSLCWTSIISLLDYDDFVTADVKKFQYRWVNEQDLINLKMMHCANLTARKRKISVIEENG 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8929g00004 605 SUPERFAMILY L domain-like 69 392 - -
Vium8929g00004 605 ProSiteProfiles Leucine-rich repeat profile. 337 358 IPR001611 GO:0005515
Vium8929g00004 605 Gene3D Ribonuclease Inhibitor 92 410 IPR032675 -
Vium8929g00004 605 Pfam Leucine Rich Repeat 275 292 IPR001611 GO:0005515
Vium8929g00004 605 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 300 429 IPR044974 GO:0006952
Vium8929g00004 605 SUPERFAMILY "Winged helix" DNA-binding domain 2 102 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8929g00004 Vium-Chr8929 10769 17102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8929g00004 3 397 WRKY Transcription Factor Family AT4G12020 33.810 4.02e-43 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8929g00004 - - vum:124847783 1221.07