Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8923g00004 ATGGTCACTCAAAGGCTTGGATATTGTGCAAACTTCCTTGAGAACTCCAAACACCACTTTGCCATGATTGCTCTGCAATTTGGCTATGCCGGCATGAACATCATCACCAAGGTTTCCCTCAACCATGGAATGAGCCATTATGTTCTTGTCGTTTATCGCCATGCCATTGCCACTGCTGTCGTAGCTCCATTTGCCTTCATCTTTGAAAGGAAAGCTCAACCAAGGATCACATTCAGAATTTTCATGCAAATTTTCATCCTTGCCCTACTTGGGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACATCTCCAACTTTCTCATGTGCAATGAGTAATGTGCTTCCTGCCATGACTTTTATAATGGCAGTTCTATGCAGGATGGAGAAGTTGAACATGAAGAAGGTGAGGTGCCAAGCAAAGGTGGTGGGAACAATGGTGACTGTGGGTGGGGCCATGGTGATGACCTTGTACAAAGGACCTCTGGTGGAAATGGTTTGGACCAAACATGCCCTTCATCAGAACCAAACCAATAATGCAACAACAACAAATAACGGAACAACACCTTCGGACAAAGATTGGCTCATAGGCTCCATTTTCCTAATCATTGCTACACTTGCTTGGGCATGCCTTTTTGTTTTACAAGCCAAAGCTATTGAAACCTACAAAAATCACCAGCTAAGCCTGACATCACTGATGTGCTTCTTAGGCACTATTCAAGCTATTGCTGTTACTTTTGTTATGGAACACGATCCATCAGTGTGGAGTATTGGGTGGGATATGAACTTGCTTGCTGCTGCATATGCTGGGATTGTTACATCAAGCATATCATACTATGTTCAAGGGTTGGTGATTAAGAAGAAAGGGCCTGTTTTTGCAACTGCATTTAGCCCTCTCATGATGATCATTGTAGCCATCATGGGTTCCTTTATCCTTGCAGAACACATTTTTCTTGGAGGTGTGGTTGGTGCGATCTTGATCGTTATAGGGTTATATTCAGTTCTTTGGGGAAAGCACAAAGAAGAAGTGGAAAACAAAGTGGTGGAGGATATTCCCTTACCTTTAAAGGGTGCAATGCTTCAAGCAAATAATCCAGATTCCAACAACATCTCTTCACTTGTCATTAATGTCACCACTGAACCTCCATTCAAATCTAACAGTTAA 1173 0.4237 MVTQRLGYCANFLENSKHHFAMIALQFGYAGMNIITKVSLNHGMSHYVLVVYRHAIATAVVAPFAFIFERKAQPRITFRIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFIMAVLCRMEKLNMKKVRCQAKVVGTMVTVGGAMVMTLYKGPLVEMVWTKHALHQNQTNNATTTNNGTTPSDKDWLIGSIFLIIATLAWACLFVLQAKAIETYKNHQLSLTSLMCFLGTIQAIAVTFVMEHDPSVWSIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEHIFLGGVVGAILIVIGLYSVLWGKHKEEVENKVVEDIPLPLKGAMLQANNPDSNNISSLVINVTTEPPFKSNS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8923g00004 390 PANTHER WAT1-RELATED PROTEIN 20 349 IPR030184 GO:0016020|GO:0022857
Vium8923g00004 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 161 - -
Vium8923g00004 390 Pfam EamA-like transporter family 21 157 IPR000620 GO:0016020
Vium8923g00004 390 Pfam EamA-like transporter family 199 338 IPR000620 GO:0016020
Vium8923g00004 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8923g00004 Vium-Chr8923 44984 48643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8923g00004 1 380 Nodulin-like Gene Family AT5G07050 67.775 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8923g00004 - - gmx:100804359 608.216