Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8923g00003 ATGAACAACCCCAACACCGACAGCTTCTCTCTGTTGGGTGTTCTTCATTCCCCCCACTTCTCTGAACTTCTCAGGGATTTCGCCACGCGAGAACTCAACGCGTTTTTATGGCTATCTCTTGTTGTTGTCACCACCCTTTTGCTCAGAAGACTCTTTAGCCTATTTGGGATATGGCGCAGGGCTAGAACCATTCCTGGGCCTCCCTCTTCCTCGTTTTTTGGAGGCTGCAAGCTCTTTTCCCGTCCAAATTTCACCTTCACTGACGTGTTGTCAGAATGCCATAAAAAGTATGGACCTATTGTTAAACTGTGGTTAGGTCCTACTCAGCTTTTGGTGTCAGTAAGGGATCCAATCTTAATCCAAGACATGCTTATAAAAGCCGAGGATAAGTTGCCTTACACGGGAAAACTGTTTCATCTGGCCTTTGGACAATCAAGCCTCTTTGCCCCTTCATTTGAAAAGGTGCAAAAGAGAAGGGAATTATTGGCAACAGAGTTAAACGAAAGATTGCTGAAGAATGGTGATATGATTCCTGTGAAAGTTGCAGACTTTATCACAGATAAAATAGAAAACATAAAAAAGAAAGGAGGTATTGATTCCAGTTTGGTTTCTCAACATATCGCTTTCACTATAATGGGTGTCACATTCTTTGGAGATGGCTTCTTGGCCTCGCCGAAGGCTGCAATGTATGAGGAACTGTTCATGACCATAGCTAAAGATGCTTGCTTTTGGGCCTCCTATAATGTTACTCCTTTCTGGAGACGTGGATTTTGGAACTACCAATGCTTATGTACAAAGTTGAAATGCTTAACTCAAGACATCCTTCAACATTGCAGAAAAGGATGTAAACTATCTAGCCATACTAAGCATGATGTACATAATGAAAGTTCCAATAAAGAAATGAAGTCAGCAGATGGTGCACAATGCTGTTCTGATGATGAGTTCCAAGATTACTATTTCTTTCGAGATCTTAAGGATCATCAAGATGGTAAAGAAGAATCTTGTGGGAATGTAATGCGCATGATATTTCACGGATGTCAAACTACCTCTGTTCTAATCACGGATGTATTGACTAGGCTTGTCATGCATGGGGAAATACAGGATAAGGTTTATTCAGAGATTAGAATGGTAGGAAGAAACCCATCGAAATATGAGCATGAAGATGTTTATAGGATGCCGTTGTTATTGGCTACAATTTATGAATCTGCACGTCTTCTTCCCACTGGTTCAATGCTGCAGAGATGTTCTTTGAAACATGACTTGAGCTTTGCATCTGGTGTAACCATTCCTGCTGGAGCTGTATTGGTTGTACCAGTTGAATTGGTACAGAAGGATGAATTCAATTGGGGGAGTGATGCAAGTCATTTCAATCCTTACAGATTTCTCTCAACTGTTACAAATAGATCAGGTTCTGCTGAAGACCTTTCTAGTAGAGGATTCAGTTCATTTGTACTAAATGATCCAAACGAAAATGCAGCATTCTTGCCTTTTGGATCAGGTGCACGGGCTTGCATCGGACAGAAATTTATCATCCAACTTGTTGCCTCAGTGTTGGCATCATTGCTAAATAAATATGAGATACGGCTTAGCACAGACTCAAATGATGACTCAAACACAACCTTGAAGAATAATCTTCTGCAGCGTCATCCCAGTTCACGGATATTATTCGTGAGAAGGGACCAGTGA 1686 0.4122 MNNPNTDSFSLLGVLHSPHFSELLRDFATRELNAFLWLSLVVVTTLLLRRLFSLFGIWRRARTIPGPPSSSFFGGCKLFSRPNFTFTDVLSECHKKYGPIVKLWLGPTQLLVSVRDPILIQDMLIKAEDKLPYTGKLFHLAFGQSSLFAPSFEKVQKRRELLATELNERLLKNGDMIPVKVADFITDKIENIKKKGGIDSSLVSQHIAFTIMGVTFFGDGFLASPKAAMYEELFMTIAKDACFWASYNVTPFWRRGFWNYQCLCTKLKCLTQDILQHCRKGCKLSSHTKHDVHNESSNKEMKSADGAQCCSDDEFQDYYFFRDLKDHQDGKEESCGNVMRMIFHGCQTTSVLITDVLTRLVMHGEIQDKVYSEIRMVGRNPSKYEHEDVYRMPLLLATIYESARLLPTGSMLQRCSLKHDLSFASGVTIPAGAVLVVPVELVQKDEFNWGSDASHFNPYRFLSTVTNRSGSAEDLSSRGFSSFVLNDPNENAAFLPFGSGARACIGQKFIIQLVASVLASLLNKYEIRLSTDSNDDSNTTLKNNLLQRHPSSRILFVRRDQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8923g00003 561 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 497 506 IPR017972 GO:0005506|GO:0016705
Vium8923g00003 561 CDD cytochrome_P450 98 553 - -
Vium8923g00003 561 SUPERFAMILY Cytochrome P450 64 559 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS E-class P450 group I signature 504 527 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS E-class P450 group I signature 94 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS E-class P450 group I signature 494 504 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS E-class P450 group I signature 353 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 Gene3D Cytochrome P450 53 561 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS P450 superfamily signature 504 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS P450 superfamily signature 495 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS P450 superfamily signature 397 408 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PRINTS P450 superfamily signature 344 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8923g00003 561 PANTHER CYTOCHROME P450 34 528 - -
Vium8923g00003 561 Pfam Cytochrome P450 65 547 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8923g00003 Vium-Chr8923 21864 27826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8923g00003 32 526 Cytochrome P450 AT1G13710 23.772 7.25e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8923g00003 - - vum:124847778 1113.21