Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8920g00001 ATGGCCTCAACCACTTTCTCCAAACAAAAGCTTTCTGATTCCTTTTGGACCCCAAAACAGAACAAGGTCTTCGAAAAGGCACTTGCAGAGTATGACAAGGATACCCCTGACCGCTGGCACAATGTAGCCAAAGCAGTCGGTGGTAAAACCGTTGAAGATGTTAAGAGACACTATCAGATACTCTTGGACGATCTCAGACACATAGAGTCTGGCCATGTTCCACTTCCCAATTACAAATCCACACCATCTTCCTCTTTCACTAATTCACGCTTTTGA 276 0.4457 MASTTFSKQKLSDSFWTPKQNKVFEKALAEYDKDTPDRWHNVAKAVGGKTVEDVKRHYQILLDDLRHIESGHVPLPNYKSTPSSSFTNSRF 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8920g00001 91 CDD SANT 16 62 IPR001005 -
Vium8920g00001 91 FunFam Transcription factor SRM1 8 75 - -
Vium8920g00001 91 SMART sant 12 64 IPR001005 -
Vium8920g00001 91 MobiDBLite consensus disorder prediction 71 91 - -
Vium8920g00001 91 Pfam Myb-like DNA-binding domain 16 59 IPR001005 -
Vium8920g00001 91 Gene3D - 7 75 - -
Vium8920g00001 91 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Vium8920g00001 91 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Vium8920g00001 91 MobiDBLite consensus disorder prediction 76 91 - -
Vium8920g00001 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 85 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8920g00001 Vium-Chr8920 7197 7713 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium8920g00001 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8920g00001 - - gmx:100805232 154.066