Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8911g00002 ATGACAGGGTTTGGCTCATCGTGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACCAGTGATTGTGTATTTGCTCCTTACTTCTCCTACGACCAAGCTTCATCCCATTTTGCAGCAGTGCATAAGATTTATGGAGCCAGTAACGTCTCCAAGCTACTGTCACATCTTCCAATCCAGAATAGAAGAGAAGCTGCCATCACCATATCTTACGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATGGTGGCAAACTCCACAGTTAGTGTTGTCAATTGTGGCACTGTCCAAGCACCAATGTACTCAGACAACGGAATACCTTATGATACTTTGCAGCATGATGCTACGAGGACACAGTATTTTCAAAACAATCTAGCAAACTTTCTTTCAGAAGATGGAAATGCCAGAGCCTTGCAAAGTTTGGAGTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTGTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTAG 657 0.4384 MTGFGSSCGACKFLRRKCTSDCVFAPYFSYDQASSHFAAVHKIYGASNVSKLLSHLPIQNRREAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEIDALGSMVANSTVSVVNCGTVQAPMYSDNGIPYDTLQHDATRTQYFQNNLANFLSEDGNARALQSLESQMNIELPNAHVEEPSFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8911g00002 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vium8911g00002 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 161 - -
Vium8911g00002 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8911g00002 Vium-Chr8911 38209 39406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8911g00002 1 114 AS2 family AT5G06080 73.684 1.11e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium8911g00002 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8911g00002 K13945 - gmx:100787638 337.421