Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8910g00011 ATGAGGACCCCTTCCTGGGACAACAGAGGACTTAAGAAAGGCACCTGGACTCCAGAGGAAGATAGAAAGCTAGTAGCTTATGTCACTCGATATGGCTCTTGGAATTGGCGCCAACTCCCAAGATTTGCTGGTCTGGCAAGATGTGGAAAGAGCTGCAGACTTAGATGGCTCAATTATCTCAAGCCCAACATAAAAAGAGGAAACTACACTGACAAAGAAGAAGAAACTATAATCAAACTGCACGAAAAGCTCGGTAACAGATGGTCTGTTATTGCCACTCATTTACCCGGAAGAACAGATAACGAAATAAAGAACCACTGGCACACCACTCTCAAAAAGCGTTTGGGAAAGAAGGCAGTTTACACTGAAACAAATGTGAAAGCCTCAAAATCAAACAGTTTTGGGTCCAACCCGGACAAGGATTGCATTCAGAACAATGGTTTCTTCCTCGAAGCTTCTCACTCTCCGACAGTTTCTAAAGCCTCTGATCCTGACCCTTTGTCCCCGGAATTATCCTCAAGCGAATTCTCGTCCTCGGATTATACCACTCGCCAAAATTTGTTTCTTGAAGATGGGTTCGATTTTCTAGATGCATACTTAGCGGACATGAACCAGAATATTTCGACAGAATCATTTCACATTTCTCAAGTCACATCACAAGCCAATGGTATCGACAATTTTCATGGTTCAGACGCACCGAAAACCATGGAATGTGTTCGGCCAGAGTCTCCTCTTTCTTACTATAATGAAAATTCCCTTGTGGAAAATGACGACTTTGGCTTTCTAGAAGCAATAGAACCAATAACTGAACATTCTTGGACGGAAGCATTCGTGGCAGATATGTCTCTTATTCCGAACGAATTACTTGTTCCTTTGGTGAACGAATCCGAATCGTACTTTTCTTCTGCGTATGACGTGGATGATATCTGGTGTGTCTGA 939 0.4292 MRTPSWDNRGLKKGTWTPEEDRKLVAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLKPNIKRGNYTDKEEETIIKLHEKLGNRWSVIATHLPGRTDNEIKNHWHTTLKKRLGKKAVYTETNVKASKSNSFGSNPDKDCIQNNGFFLEASHSPTVSKASDPDPLSPELSSSEFSSSDYTTRQNLFLEDGFDFLDAYLADMNQNISTESFHISQVTSQANGIDNFHGSDAPKTMECVRPESPLSYYNENSLVENDDFGFLEAIEPITEHSWTEAFVADMSLIPNELLVPLVNESESYFSSAYDVDDIWCV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8910g00011 312 MobiDBLite consensus disorder prediction 155 177 - -
Vium8910g00011 312 Gene3D - 6 65 - -
Vium8910g00011 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vium8910g00011 312 CDD SANT 68 111 IPR001005 -
Vium8910g00011 312 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium8910g00011 312 Gene3D - 67 136 - -
Vium8910g00011 312 CDD SANT 15 60 IPR001005 -
Vium8910g00011 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 205 - -
Vium8910g00011 312 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium8910g00011 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vium8910g00011 312 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vium8910g00011 312 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium8910g00011 312 SMART sant 65 113 IPR001005 -
Vium8910g00011 312 SMART sant 12 62 IPR001005 -
Vium8910g00011 312 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vium8910g00011 312 FunFam MYB-related transcription factor 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8910g00011 Vium-Chr8910 131765 133082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8910g00011 2 117 MYB Transcription Factor Family AT2G31180 68.103 1.36e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8910g00011 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8910g00011 K09422 - gmx:100811124 367.466