Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8910g00003 ATGGGAAGAGCACCTTGTTGCAACAAAAATGGTCTCAAAAAGGGTCCTTGGACACCTGAAGAGGATCTCATGCTCACCAACTACATTCAAACTCATGGACCTGGAAATTGGCGAACCCTTCCCAAGAATGCTGGTTTACAACGATGTGGCAAGAGTTGCCGTCTTCGATGGACTAATTACCTTAGACCCGATATCAAGAGAGGAAGGTTCTCGTTTGAAGAAGAAGAGACCATCATTCAGCTTCACAGTGTCTTGGGAAACAAGTGGTCGGCAATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAAATAAAGAACTATTGGAACACTCACATCAGGAAGAGGTTGCTGCGAATGGGAATCGACCCTGTTACACACGCTCCACGCCTTGATCTTCTTGACATGTCCTCGATTCTTAGGTCAGCAATCGGCAACGTTAATCCATCGTTTCTGAATCTGCAAGGTTTGCTGAGTGCCCAGGCGTTGATGAACCCAGAGTTTCTGAAGCTCGCTGCCACTGCCACTTTGTTATCATTGAAGAATGATCACAATCAGAACCCATCAAACTTAGTTTCACAAGTTCAACAACAATTCAATAACAGTGTAGGGAATTGTCAAGTGCAAAGCCAGGTTTTCCCTAATCAGTTTCAGACTCCAACTGAAAGCAACAACGTGAATAATGGGATTTCAATGTCCCCAGACAATTCACTTCCTTCCTATCTCGGTGAGCATAGTTACCTGAACCCTCAACAAAACCAAGTTGATTTGCTACAGGACCCGGAATTGGTACATTTGTTAAACAGTGCAAACCAAAACATAGGCTACGAATCCGTTCTGTCTACGCCTTTGTCTACCCCAACTCCATTGAATTCATCATCCACTTATGTGAATAGCAGCACCGAGGAAGAGAGGGACACGTATTGCAGCGATATATTCAAGTTAGAAATTCCAGAGAGTTTGGACATTAGTGATTTCTTGTAA 981 0.4414 MGRAPCCNKNGLKKGPWTPEEDLMLTNYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSAIGNVNPSFLNLQGLLSAQALMNPEFLKLAATATLLSLKNDHNQNPSNLVSQVQQQFNNSVGNCQVQSQVFPNQFQTPTESNNVNNGISMSPDNSLPSYLGEHSYLNPQQNQVDLLQDPELVHLLNSANQNIGYESVLSTPLSTPTPLNSSSTYVNSSTEEERDTYCSDIFKLEIPESLDISDFL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8910g00003 326 CDD SANT 69 112 IPR001005 -
Vium8910g00003 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium8910g00003 326 CDD SANT 16 61 IPR001005 -
Vium8910g00003 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium8910g00003 326 FunFam Transcription factor MYB39 69 130 - -
Vium8910g00003 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium8910g00003 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Vium8910g00003 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium8910g00003 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium8910g00003 326 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium8910g00003 326 FunFam MYB-related transcription factor 13 66 - -
Vium8910g00003 326 Gene3D - 13 66 - -
Vium8910g00003 326 SMART sant 13 63 IPR001005 -
Vium8910g00003 326 SMART sant 66 114 IPR001005 -
Vium8910g00003 326 MobiDBLite consensus disorder prediction 281 301 - -
Vium8910g00003 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium8910g00003 326 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8910g00003 Vium-Chr8910 45414 46986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8910g00003 1 326 MYB Transcription Factor Family AT4G21440 49.046 2.91e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8910g00003 Myb_DNA-binding 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8910g00003 K09422 - gmx:100812189 525.398