Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8910g00002 ATGGCAATTCTTAGAGGACACAAACTCGTTGAAAAATGTAAGATTGGTCCATCAATGAGATCAACTTCTTCTGTTCCTCTGTCGTTCCTTGATTTGCCTTTAGCAGGTCCTATTTATGTCAGACGCCAATTCTTCTACCACTTCCCCCATTCCACACTCCATTTTTGTGAAACTACCCTTCCTTCTCTCAAAACCTCTCTCTCTCAAACCCTTCAACTCTTCTTCCCTCTTGCCGGAAACCTCCTGTGTCCTCCACCACCCCATAAACCCTTCATTCGTTGCACCGATGATGACTCTGTCCCCTTCACTATCATCGAGTCCAAAGCTGATTTCGACTACCTCTCATCGAACCACCCCAAAAGTCTCAAAGACTTGGAACACTTGGTTCCCAAGTTAGCATGCACGAACACACACGATGACACGTTTGTGTTCCCTTTGCTGGCATTGCAAGCCACGGTTTTCCCCAACCGGGGCCTCTGCATCTCGATCACCTATTGCCACGTGATGGATGATAGTTGTTGCAGCAATTTCATGAAGTCTTGGGCTTCCTTTTGTCGAAGTGGTGGCGTTGACTTGACTCTTGAAGGAAAGTCAGCTCCGTGCATGGACAGGGGAGTGTTGAAGGACCCCAAAGGGTTGGAAGCTATCTTCTTAAGAGATTATTTTGAAGAGAGGTCAACTTGGAAGGAAAAGCTCGCTGGGAAAAGCTCGGAGGTTTGCAATGCTGAAGATTATGTCAAAGCCACGATTGTTTTTGGAAGGGATGATATCGAGAGGCTGAGAAGATCGGTGTTGAAGCAGTGGAAGAGAAGTGAAGAATTCAGCACGTCACAACATGTATCGAAATTTGTGGTGACTTGTGGCTTTGTGTGGGCTTGTTTGGTTAAAACAAGACACAGAAGCGAATACGAAGAAGATAAAGAAGAGTACTTTCGTTTCGCTGCAGATTGCAGAGATTGGCTTGAGCCTGCTGTGCCAGAAACATACTTTGGAAACTGCTTAACGTTATGTTTTGCAATGCTGAAGAGAAAGGAGCTGAAGGGAGAAGGTGGTTTTGTGAATGCGGTGAAGGTTATGAGAAGGGCAGTGAGTGATATGAAAAGTGATCTGTTTAAGGATGCAGAAAACTGGAGGGAAACATTTACGAGGATGTTTGCTTTGGGAAGTACTTTGATAGTTACAGGGTCACCCAAGTTCACTGTTTATGAGACTGATTTTGGATTTGGAAAGCCTAAGAAAGTGGAAATGGTACATTCCATGAAGGGTATGTCTCTAGCAGAGAGTGGAGAAAAGGAAGGAGGACTTGAAGTTGGCTTGGTGTGTACAAACACACAATTTGAATATTTAGTTTCTGTCATTAAACAAGAACTTCAACTTTCACAATCCTGA 1389 0.4428 MAILRGHKLVEKCKIGPSMRSTSSVPLSFLDLPLAGPIYVRRQFFYHFPHSTLHFCETTLPSLKTSLSQTLQLFFPLAGNLLCPPPPHKPFIRCTDDDSVPFTIIESKADFDYLSSNHPKSLKDLEHLVPKLACTNTHDDTFVFPLLALQATVFPNRGLCISITYCHVMDDSCCSNFMKSWASFCRSGGVDLTLEGKSAPCMDRGVLKDPKGLEAIFLRDYFEERSTWKEKLAGKSSEVCNAEDYVKATIVFGRDDIERLRRSVLKQWKRSEEFSTSQHVSKFVVTCGFVWACLVKTRHRSEYEEDKEEYFRFAADCRDWLEPAVPETYFGNCLTLCFAMLKRKELKGEGGFVNAVKVMRRAVSDMKSDLFKDAENWRETFTRMFALGSTLIVTGSPKFTVYETDFGFGKPKKVEMVHSMKGMSLAESGEKEGGLEVGLVCTNTQFEYLVSVIKQELQLSQS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8910g00002 462 PANTHER - 8 457 - -
Vium8910g00002 462 Gene3D - 242 460 IPR023213 -
Vium8910g00002 462 Pfam Transferase family 15 446 - -
Vium8910g00002 462 Gene3D - 7 233 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8910g00002 Vium-Chr8910 19196 20750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8910g00002 19 411 Monolignol Biosynthesis Gene Families AT5G48930 22.141 4.52e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8910g00002 - - pvu:PHAVU_005G109000g 800.816