Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8910g00001 ATGGCAGAAGTTAGAACACATAACCTTGTTGAGAAATCTCATGTTGCTCGAGCATCACTTCCTAGTTCTACAACAAGAACAACCTCGTCTCTTCCCCTCTCATTCCTTGACTTGCCTTTAGCTGGTCCTGTTTATGTCAAACGCCAATTCTTCTATCAGTTTCCCCACTCCACACACCATTTTTGTGAAACTACACTCCCCACTCTCAAGCACTCTCTCTCTCTTATCCTTCAACACTTCTTTCCTCTAGCTGGAAATCTCCTTTCTCCTCCACCACCCCACAAACCTTTCATTCGCTGCACTGATGATGACGCTGTCCCTTTAACCATCATTGAATCCAAAGCCGATTTCAACCATCTCTCATCCAACCATCCTAAGAGTCTCCATGAATTGGGTCACCTGAATCCCGAGTTGACATTCGCAACCATGCATGATGACACGTTCATTTTCCCATTAGTGGCATTACAAGCCACGGTGTTCGAAAGCCATGGCCTTTGCATCGCCATCACGTACTGTCATGTGATGGATGGTAAGTGTTGCAATCATTTCATGAAGTCTTGGTCTTCCCTTTGTCAAAGTGGTGGAGTTGACTTGACACTTGTAGAGAATTCACCACCGTGTTTCGGTAGGGAAGTGTTGAGGGACCCCAGAGGAGGACTCGAGGACATTTTTTTGAGAGACTATTTCGTAGAGAGATCAACTTGGAAGGACAAGCTCATTGAACAAACTCCTAAACACGAGGAGTATTTTAAGGCGACGATTGTCTTTGGGAGAGATGACATTGAGGGTTTAAAAAGATGGGTTCTGGAACAGTGGAAGAAAAATGACGAGTTTAACTGCCCGCAATATTTGTCAAAATTTGTGGTTGTTTGTGCTCTTGTGTGGACTAGCTTGGTTAAAACAAGATACAAAGATGATGATGATGAAGATGTTAAAGAAGAATACTTTCGTTTCGCTGTAGATTGCAGAGGTCGCCTTGGTCATCCTGTGCCAGAAACATACTTTGGAAACTGCTTAGCGCTGTGTTATGCCATGCTTAAGAGAAATGAGCTTAAGGGAGAGGATGGTTTTGTGAATGCGGTGAAGGTAATTGAAAAGACAGCGAGTGATATGAAAAGTGAGCCTTTTAAAGAAGCAGAACATTGGAGGGCTTTGTTTGTGAAAACGTTTGTGTTGGGAACTCCGTTGCTAGTTACTGGGTCACCTAACTTCGATGTTTACGAGACTGATTTTGGATTTGGAAGGCCAACCAAAGTTGAAATGGTACATTCCTTCAAGTGCATGTCTCTAGCCGAAAGTAGAGATGAGGAAGGAGGACTTGAGGTTGGTCTGGTGTGTAAGAGTGAGGAGTTTGAATATTTATTTTATGTCCTTCAACAAGGACTACAAACTACAAAATCCTCAGTGTGTTAA 1413 0.431 MAEVRTHNLVEKSHVARASLPSSTTRTTSSLPLSFLDLPLAGPVYVKRQFFYQFPHSTHHFCETTLPTLKHSLSLILQHFFPLAGNLLSPPPPHKPFIRCTDDDAVPLTIIESKADFNHLSSNHPKSLHELGHLNPELTFATMHDDTFIFPLVALQATVFESHGLCIAITYCHVMDGKCCNHFMKSWSSLCQSGGVDLTLVENSPPCFGREVLRDPRGGLEDIFLRDYFVERSTWKDKLIEQTPKHEEYFKATIVFGRDDIEGLKRWVLEQWKKNDEFNCPQYLSKFVVVCALVWTSLVKTRYKDDDDEDVKEEYFRFAVDCRGRLGHPVPETYFGNCLALCYAMLKRNELKGEDGFVNAVKVIEKTASDMKSEPFKEAEHWRALFVKTFVLGTPLLVTGSPNFDVYETDFGFGRPTKVEMVHSFKCMSLAESRDEEGGLEVGLVCKSEEFEYLFYVLQQGLQTTKSSVC 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8910g00001 470 Gene3D - 247 464 IPR023213 -
Vium8910g00001 470 Gene3D - 7 238 IPR023213 -
Vium8910g00001 470 PANTHER - 8 463 - -
Vium8910g00001 470 Pfam Transferase family 21 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8910g00001 Vium-Chr8910 5492 7091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8910g00001 22 452 Monolignol Biosynthesis Gene Families AT5G48930 23.144 1.92e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8910g00001 - - var:108332870 932.169