Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8905g00008 ATGTACAAAGTGGTGCTTGAAGATGGGCTTGCTTTGGCTGTGAGGAGATTGGGGGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACCGAGGTAGAAGCAATAGGGAAGTTAAGACATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATATCCAACGGAAGCCTTGATACAGCAATTCATGGGAAGGCTGGACTTCTGACATTTGCACCACTTTCTTGGTCCTAA 264 0.4318 MYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYISNGSLDTAIHGKAGLLTFAPLSWS 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8905g00008 87 ProSiteProfiles Protein kinase domain profile. 1 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8905g00008 87 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Vium8905g00008 87 Pfam Protein tyrosine and serine/threonine kinase 11 75 IPR001245 GO:0004672|GO:0006468
Vium8905g00008 87 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 86 IPR046959 -
Vium8905g00008 87 SUPERFAMILY Protein kinase-like (PK-like) 2 80 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8905g00008 Vium-Chr8905 40219 41577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8905g00008 1 87 Receptor kinase-like Gene Family AT2G01210 83.908 5.35e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium8905g00008 PK_Tyr_Ser-Thr 4.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8905g00008 - - vum:124847744 177.178