Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8905g00007 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGATAAACAAGATGATGGCATAATTGACCTGGGTCTCAGTCTCGGAACTGTTCAGCACGAAGCTTACCATTCTTCCAGCAACTTGTATGATGATGACCTTATGAACTGGCCTCAGTCTAATCTGAACCTGAAGAACTCAAGCACAATGCATGGCAGATCTGTGAACGAAAATTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCTTATGTGAAGGTGAACATGGATGGGGTTACCATCGGTAGGAAAATCTGTGTGCTTGATCACGGTGGATACTCAAGCCTAGCACTTCAATTAGAAGACATGTTTGGAAACCAATCTGTTTCTGGATTAAGATTGTTCCAATCGAGATCAGACTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGACCTGTCGGTGATGTACCTTGGAAGGAGTTTATAGAATGTGTAAAAAGGTTGAGGATTGCGAGAAAGAATGCAGGCATTGTTTCTTGA 555 0.4162 MDSNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSSNLYDDDLMNWPQSNLNLKNSSTMHGRSVNENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGNQSVSGLRLFQSRSDYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNAGIVS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8905g00007 184 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Vium8905g00007 184 Pfam AUX/IAA family 64 178 IPR033389 -
Vium8905g00007 184 SUPERFAMILY CAD & PB1 domains 92 175 - -
Vium8905g00007 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 48 179 IPR003311 GO:0005634|GO:0006355
Vium8905g00007 184 Gene3D - 86 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8905g00007 Vium-Chr8905 35618 37347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8905g00007 82 178 B3 DNA Binding Superfamily AT1G34310 34.021 8.17e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium8905g00007 AUX_IAA 1.3e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8905g00007 K14484 - gmx:100777024 341.658