Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8905g00002 ATGGAGGCGCAACCGCCAACACCCTCGACTGCGCCGCCACCTCCGCCGCCACACCTCAGCTACCCCGACTCGGTGGAATCCTCGCCACGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTTGCGCCGGCGTCGTCCAAGCTACGTCTGATGTGCAGCTACGGTGGACATATCGTTCCGCGTCCACACGATAAGTCCCTCTGTTACGTCGGCGGCGACACGCGCATCATCGTTGCGGAACGCGCTACGTCACTCGCGGACCTCTCCACGCGCCTCTCCAAGACGTTCCTGAACGGACGGACCTTTACGCTGAAGTACCAACTTCCGAACGAGGACCTCGATTCTCTCATCTCCGTCACCACTGACGAAGACCTGGAGAACATGATCGACGAGTATGACCGCACCGCCGCCGCTGCCACCTCCGTCGTCAAACCCTCCCGCATCCGCCTCTTTCTCTTCCCCACCAAACCCGATTCCACTCATTCCATCCCCCCCCAAATTCTCGACACCTCGACCAAATCGGACGACTGGTTCTTGAATGCCCTAAACGGCAACGGAGTACCTAACCGAGGGTTTTCCGACTCTGCTTCTGTTAATTGCCTCGTCGATCTCGACGACGAGGTTGCCGGGAACAACCTCGAACCCGGTTCCAAGGACGTTGGGGAAGGTGGTCCTGGTGCTGGTGTTGGTGGAGGCGCTTCTTTGGGTGGATCTTTTGGGAACGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCATCGTTTGGGTCCACGTCGTCGTCACCGTCGCTCGCCAATTTGCCGCCGATTAGGGTTCATGTCGTGGAGGATCAGAAGGTAATGGGGATTGAAGAGCAGTTCGCGCAGATGGGGGTTGGATTGGGGCAGAAACAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCTCCTCCGCCAGTCCCGGCCACCCTCGCCGCCGTGGGTGTACCGATTGGGCCACCGACGATTGTCGCTGGGGATTATCACAACCGTGTTGTCTCTGATGATGAGAGATCCGATCATGGGGTTCCTGTCGGGTATAGAAAGCCTCCCACTCCTCAGCCCCAAGTACAGACGCAAGCGCAGTCACAAACACAAACCCTTGCTCCTCAGTTTCAACAGAAGTCAACTGGTGGTAGCGGCGGTGTTGTTGATGTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAACTCAATTTCGCGTCAGAAACCTGCTGTTTATCAAGAACAAGTTCAGATTCAATCTGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTCAATGTTTCTGATCCGCACGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTACAACAGCAATTTGAACAGCATCAGCAGACGCAGCAGTTGCCACAACAGCAATTCGAGCAGCACCAGCAAGCGCTGCCACAACAGCAGCAACAGTTTATTCATGGCACACATTTCATCCACCATAACCCTGCAATTTCTGCGTATTATCCTGTATATCCTTCCCAGCAACATCCACAGCATCCACAGCAGCCACAGCTTTACTATGTTCATGCGAGGCAACCGCAGGCTTACAACCTACCTGTGCAGCAGGCTAATATGGGTGACTCTGCTGGAAATCTTGCTTCTAGCCGCCCACAAACTCCACCAAATCCTGCTACACTGGTTCCACAATCTGCTGCATACAATCCCATGAGAAATGCTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCCGCAACTGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTACGTCACTTACTCACAGATTCACCATCCATCTCAGTCCATGGCTCCCAATTCTGCTCCCCAGGCGAATTATGGTTTTGATTATGCTGACCCTGCTCATGCTCAAATATACTACTCTCAACCCTTGGCACCCACAATGCCTTCCCAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCGGACAGTTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2112 0.5388 MEAQPPTPSTAPPPPPPHLSYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRTFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSVVKPSRIRLFLFPTKPDSTHSIPPQILDTSTKSDDWFLNALNGNGVPNRGFSDSASVNCLVDLDDEVAGNNLEPGSKDVGEGGPGAGVGGGASLGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGLGQKQQDEGFVLLSSPPPPPVPATLAAVGVPIGPPTIVAGDYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQTQAQSQTQTLAPQFQQKSTGGSGGVVDVPSPDSVSSDSSLANSISRQKPAVYQEQVQIQSGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQTQQLPQQQFEQHQQALPQQQQQFIHGTHFIHHNPAISAYYPVYPSQQHPQHPQQPQLYYVHARQPQAYNLPVQQANMGDSAGNLASSRPQTPPNPATLVPQSAAYNPMRNAPMPKTEMNAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAPQANYGFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQEGSAQHPSDSLKQQIRTSQPL 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8905g00002 703 MobiDBLite consensus disorder prediction 368 444 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 254 275 - -
Vium8905g00002 703 Pfam PB1 domain 63 154 IPR000270 GO:0005515
Vium8905g00002 703 MobiDBLite consensus disorder prediction 1 22 - -
Vium8905g00002 703 SUPERFAMILY CAD & PB1 domains 63 163 - -
Vium8905g00002 703 Gene3D - 67 153 - -
Vium8905g00002 703 PANTHER OS05G0427100 PROTEIN-RELATED 20 516 - -
Vium8905g00002 703 CDD PB1_UP2 51 153 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 474 498 - -
Vium8905g00002 703 ProSiteProfiles PB1 domain profile. 47 155 IPR000270 GO:0005515
Vium8905g00002 703 SMART PB1_new 62 155 IPR000270 GO:0005515
Vium8905g00002 703 MobiDBLite consensus disorder prediction 557 580 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 681 703 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 24 40 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 350 445 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 210 275 - -
Vium8905g00002 703 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8905g00002 Vium-Chr8905 2664 5372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8905g00002 45 205 MAP Kinase Kinase Kinase AT1G16270 36.095 1.95e-23 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8905g00002 - - gmx:100775954 1055.43