Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8901g00001 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGAAGGCGCTACACTTGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCACCGGCGCCGGAAAATGCCAGCTCATTCACTGCTCTACTTGAGCTTCCGCCAACCCAGGCGGTGGAGCTCCTTCACTCGCCCAACTCTGATGGAGCTCGGAAGCCACCTAATTGCCACGTCAGCACTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCTTTAATTGAACGCGCAGCCAAGTTTTCCGTGTTTGCTGGTGAAAACTCAACGTCGCCGGGGGAGGCATGTCTGCTTCGGGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGTGTTTCTGATCCTGTTGTTGAGAACAAGAACGAGAAGACGACCGCGAAGAGAAAGGAGCGAGAGAAGAAAGTAACGGTTAGAGGATCCTTGAAGAAGAGTAAGAGCGTCGCTGATGAGACCTCCGTTGACAGTGAGAAGCTTCCCTATGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTACTGGCTACTGACGGGGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCAGAAATCCCAGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAATTCGATGCATTCCACCAACCGTTATGGGAGAGGGAAGAAGTCAACCACAATTTCATCACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1107 0.4986 MEQAPVGLRGSVHEGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPNSDGARKPPNCHVSTNHKPYLLNSFGGNLTFPSNAALIERAAKFSVFAGENSTSPGEACLLRAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPVVENKNEKTTAKRKEREKKVTVRGSLKKSKSVADETSVDSEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFITPENSLLSYDSSANSASLHSNQLKMEL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8901g00001 368 Coils Coil 248 268 - -
Vium8901g00001 368 FunFam transcription factor bHLH48-like isoform X1 205 277 - -
Vium8901g00001 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Vium8901g00001 368 CDD bHLH_AtBPE_like 198 283 - -
Vium8901g00001 368 Gene3D - 205 277 IPR036638 GO:0046983
Vium8901g00001 368 SMART finulus 214 264 IPR011598 GO:0046983
Vium8901g00001 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 97 351 IPR024097 GO:0006355
Vium8901g00001 368 MobiDBLite consensus disorder prediction 139 158 - -
Vium8901g00001 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
Vium8901g00001 368 MobiDBLite consensus disorder prediction 159 191 - -
Vium8901g00001 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Vium8901g00001 368 MobiDBLite consensus disorder prediction 130 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8901g00001 Vium-Chr8901 560 16179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8901g00001 7 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.444 1.17e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8901g00001 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8901g00001 - - vun:114168708 682.559