Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8897g00006 ATGACAAAGAAGTCGAAGCAGCGCCCTGCACCGGTGGAAGATCCTTCAACTGCTTCCTCCTCCGAATCTGAGGAAGATGATGACCGACCGCATTCTTCTCAACAGCATGCAGCAGCACCACAGGTTTCTTCCTCTGAGGAGGAAGACGATTCTTCAGAAGAAGAAGACGAGAAGAAACTTTCCACTCTCCCTGCTTCTATAAACCATCCCTCCAAGCCTCACCCCAAGTCCTACTCATCTGAATCCGAACCCGACACTGACTCGGAACCAGCTCGAGTCAAACCCAAACCCAAGCCCACGGACCTACCCCAGCCCAAGGTCCAAGCCCAGCGTTCCTCCACGCCGGTGAAACCGGGATCCAAGCGCCCCGCCCACGTAACTGAGCAGAAACGCGCGAAAAAGAAACCAGTTGAGGCTCCTTCTCCCTCCGTTGCTAACGACGAGACAGAGGAGGACGGGAAGAAGTCCGGCGGGCAAGCGAGGGTGTTGTTCCAGAGGATCTGGAGCGAAGAAGACGAGCTCGGCATTCTTAAGGGCATACTTGAGTTCATCTCAAAGACCGGACAAGAGCCTTAGGTATGCCACGCTTTCCACAAGTTCATTAAGAAGTCACTCCACGTGGAGGTTTCCAGCCATCAGCTGAAGGAGAAGATTCGACGGATGAAGAAGAAGTTCGAGACTAGTGAGGCGAAAAAGAAGAAAGGGATTTGGCCTCGGTTGTTGAGGCCTCACGACCGGGCCGTGTATGAATTATCCAAGAAGATTTGGGGTGAATGGCCCAACGGACTGGTGGAAAAGCCCAAGCCTCTTGCGAAATACGTTACCAAGACTCAAAAGAAGGAATCAAAAGCCGAGGACAAAGTTCCGTCGCAGCCATCAGCGCCGCTGCTGGCGTTGCCGGCGCCTGAAAGTGGTGACGTGAGTTTGCTTTACAGCAGTATTTCTTGTTTTAAAGAGCTGGATGAGGATGAGATGAAGAGAGGACTTACTTTGATTGGAGAATCCAAGAGGAAGGAATTGGAGAGAAGGTGGAAAGTGTTGCAATATTCTGAGATGGAGCTGCTTGCGAATCGCTCTCTACTGATTGGGGAGCAGATTAAGTTGGTATCTGAAGCCCTACAGTCATCCAACAATTAG 1137 0.5154 MTKKSKQRPAPVEDPSTASSSESEEDDDRPHSSQQHAAAPQVSSSEEEDDSSEEEDEKKLSTLPASINHPSKPHPKSYSSESEPDTDSEPARVKPKPKPTDLPQPKVQAQRSSTPVKPGSKRPAHVTEQKRAKKKPVEAPSPSVANDETEEDGKKSGGQARVLFQRIWSEEDELGILKGILEFISKTGQEPYXVCHAFHKFIKKSLHVEVSSHQLKEKIRRMKKKFETSEAKKKKGIWPRLLRPHDRAVYELSKKIWGEWPNGLVEKPKPLAKYVTKTQKKESKAEDKVPSQPSAPLLALPAPESGDVSLLYSSISCFKELDEDEMKRGLTLIGESKRKELERRWKVLQYSEMELLANRSLLIGEQIKLVSEALQSSNN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8897g00006 379 PANTHER BNAANNG10740D PROTEIN-RELATED 32 372 IPR007592 GO:0006355
Vium8897g00006 379 MobiDBLite consensus disorder prediction 277 300 - -
Vium8897g00006 379 Coils Coil 212 232 - -
Vium8897g00006 379 Pfam Protein of unknown function, DUF573 164 258 IPR007592 GO:0006355
Vium8897g00006 379 MobiDBLite consensus disorder prediction 1 157 - -
Vium8897g00006 379 MobiDBLite consensus disorder prediction 123 137 - -
Vium8897g00006 379 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8897g00006 Vium-Chr8897 56648 58050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8897g00006 116 373 GeBP Transcription Factor Family AT1G61730 31.502 1.49e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vium8897g00006 DUF573 3.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8897g00006 - - vun:114182157 529.635