Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8896g00008 ATGGCCTCCACCAAGGAACGCGATAACTTCGTCTACGTTGCCAAGCTCGCCGAACAAGCCGAACGCTATGAAGAAATGGTGGATGCAATGAAGAATGTGGCGAAGCTAAACGTGGAACTGACGGTTGAGGAGCGGAACCTTTTGTCGGTAGGGTACAAGAACGTGGTGGGTGCTCGTAGGGCTTCGTGGAGGATTCTTTCGTCGATTGAGCAGAAGGAAGAGGCGAAAGGGAACGATGTGAGTGTGAAGCGGATAAAGGAGTATAGGCAGAAGGTGGAGTCTGAGTTGTCCAATATCTGCAGTGATATCATGACTGTTATTGATGAGCACCTTATCCCCTCTAGCACTACTGGTGAACCTAGTGTCTTTTTCTACAAAATGAAGGGTGACTATTACCGGTATCTCGCGGAGTTCAAGTCCGGTGAAGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAGACAGCTTCCACTACTGCAGAGGCTGAGTTACCTCCTACGCATCCTATCCGACTGGGTCTGGCTTTGAACTTTTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGGGCTTGTCACCTTGCAAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTTCTGAGGGACAACCTCACCTTGTGGACTTCTGACATCCCTGAAGATGGAGAAGAACAAAAGGTGGATTCTGTCCGAGCTGCTGGTGGTGAAGAGGCATAG 777 0.4788 MASTKERDNFVYVAKLAEQAERYEEMVDAMKNVAKLNVELTVEERNLLSVGYKNVVGARRASWRILSSIEQKEEAKGNDVSVKRIKEYRQKVESELSNICSDIMTVIDEHLIPSSTTGEPSVFFYKMKGDYYRYLAEFKSGEERKEAADHSMKAYQTASTTAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGEEQKVDSVRAAGGEEA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Vium8896g00008 258 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Vium8896g00008 258 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Vium8896g00008 258 PIRSF 14-3-3 1 247 IPR000308 -
Vium8896g00008 258 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Vium8896g00008 258 Coils Coil 13 33 - -
Vium8896g00008 258 PANTHER 14-3-3 PROTEIN 7 238 IPR000308 -
Vium8896g00008 258 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Vium8896g00008 258 SMART 1433_4 7 248 IPR023410 -
Vium8896g00008 258 MobiDBLite consensus disorder prediction 239 258 - -
Vium8896g00008 258 Pfam 14-3-3 protein 14 235 IPR023410 -
Vium8896g00008 258 Gene3D - 1 250 IPR036815 -
Vium8896g00008 258 FunFam 14-3-3 protein epsilon 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8896g00008 Vium-Chr8896 61170 64702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8896g00008 1 258 14-3-3 family AT2G42590 79.008 2.85e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8896g00008 K06630 - gmx:100807980 484.952