Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium888g00001 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACGGCAAGGAACGTCAGGTATGAAAGCGGGGCGTCACAGTCATCTTCCTCTGCCATCACCAACATAGCAAACTATGCTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAACCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATGATGGGTCTAGGCCTCTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTACGAGGAGAGAAGGGTACGGAGAATAGTTTCAGATCGATGTTGCAAGAATCAAGAACAAATTTTCAGCAAGAAACTGGGGTGGAGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTACAGAATCTTCGACGAATGAGTTCAAGCATGTGAATAGGGGTTTCTCCTTGGATCAAAGCAAGTTTAGTCCACAATATAGTTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTATATGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGATCACAATAACCAACAACCTTCTTCCTTTGAGAACCGCTCCATGAGTTTTCCATACCCAACAACCTATGGATTAAACTCTAATAATGAACTCATCCCTTCCTGGTCCAAAGTTCCTCAATTTTTGAGAGGTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTGCAAACTTCAAAGATGTTCGGTCCAGCTTCTTCCCTTCATTGCAACCCCCCTTCTCTACGCCAAATTTCGAAGTACAGTCTAAGAATATATCTGAAGTTAGGGAGTCTGGTACTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCGGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACACCGTATATGAAAACTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCAAGCACATTCCCAGTAACTCATGAAACAACAGTGGATTTTTGGACACCAACATTCGGAGGAGTTTCCAGATAG 1353 0.4501 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIANYAWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQESRTNFQQETGVELSQQVQWRSEKMFSTESSTNEFKHVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDHNNQQPSSFENRSMSFPYPTTYGLNSNNELIPSWSKVPQFLRGSPPKQPPNNQLHFTNNAPFWNASEAANFKDVRSSFFPSLQPPFSTPNFEVQSKNISEVRESGTVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKTGAPIQIQQNSGKCKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGVSR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium888g00001 450 MobiDBLite consensus disorder prediction 51 82 - -
Vium888g00001 450 CDD bHLH_AtbHLH_like 336 387 IPR045239 -
Vium888g00001 450 Gene3D - 340 400 IPR036638 GO:0046983
Vium888g00001 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 139 431 - -
Vium888g00001 450 FunFam Transcription factor bHLH123 family 340 402 - -
Vium888g00001 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Vium888g00001 450 SMART finulus 341 385 IPR011598 GO:0046983
Vium888g00001 450 MobiDBLite consensus disorder prediction 309 337 - -
Vium888g00001 450 MobiDBLite consensus disorder prediction 49 82 - -
Vium888g00001 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 397 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium888g00001 Vium-Chr888 23673 28090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium888g00001 103 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.770 2.16e-76 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium888g00001 - - gmx:100778697 767.303