Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8871g00002 ATGGACACAAGTTGCACAAGAACAGCTTTAAGAACCATCCTCTTCCTCCTCCTGTGGTCGTGCCTTTCTTTCATTTCCATGGCAGACGTTATTTATCGTCCCACTGATCTCTTTAGCATCAGCTGTGGCTCATCCACCAAGTTCTCCACTCAAGACACTCGGAATTGGACTTCAGACAATCCCTTCCTCTCTCCAACAAACCCCTCAGTCGCTGCTCCTTCACTCACACCATCTACCATACAGGGTCCCTACACCCATGCTCGTCTCTCTTACTCCTCATTCAATTACTCCTTCCCTGTCACACCAGGCCCCAAGTTCATTCGTCTCTTCTTCTACTCTACTTCATACCATAACTTCCCTCGCTTCCAAGCCTCTTTCTCAGTCAAAGCAGGCCCCTTCACCCTCCTTCAAGATTTCAACGCTTCCCTCAACGCCGATGCTGATGATGACCCTAGCCACCCTGATATATTGTTCAGAGAGTATTGCGTCTACGTAGGAGACGGTGAGAAGCTCAATATAACCTTCTTTCCCAGCACCACATATTCCTACGCTTTCATCAACGGGATCGAGATTGTTTCGATGCCCCCTTATCTATACTACACCAATCCTGGCGACTCCACAGAGCAGCAGCAAAATGTTGGCACCACGACCCCATATGTCGTTGGGAACAAATTTGCTCTGGAGACCATGTACAGGTTACTCGTTGGAAAGGAAATTCCCCCCTCAGAAGACACGGGTATGCTAAGAACGTGGGTACCTGACCTCAAGTACGTAAAAACTCCATATAATCAATCAGTTGATTATGGGAGTCATACAAAGCTCAAGTTCATTAAAACCTATAACTACACGGCACCAGATCAAGTGTACAGAACCGTTCGGAGTATGGGACCTGATGGCTCCATCAACATGGGTTTCAATCTCACATGGCTGCTTCCAGTTGATTCAGGCTTCTTCTACATGCTACGGTTACACTTTTGCCAGCTTGATCCGTGGGTTAACAACATTGGTGACCTGTTTTTCAACATCATCATAGCGGATCAGTTGGCTACCGATCGGGCAGACGTTCTCCTGTGGACTGATAATCAGAAGGGCGTACCGGTGGTTAAAGACTACGTAGTTTCCATACAAGGTAATCTCAACAAAACAAATCTATCAGTGAAACTGCATCCTCGCCCTACAAGCCGGATCAGAGACGCGGTTATCAACGCAATTGAAGTCTTCAAAATCAACAGCTCAACAGGTAGTCTAGCTGGACAAAACCCAAACCCCCCTCCTCAAAAGCCCAAGGTTCCCCTTAGCTCAAACAAGAAAAGTAGCGTCTTCACGAAAAACCGAGAAGCCATACTAGGGGCAGTTGCAGGTGTCCTTTTGCTCTCTTCTATTGTTGTTTTCTTCCTCATCAAATGCAAAAGGAATATTGCCGTTGAAAGTGGTTACAGCAAAAAGGGCGGAACTTCTCGCGGGGGTGGCTCATCGTCACTGCCAACCAACCTCTGCCGCTACTTCTCCATAGCAGAAATCAGAGCCGCCACCAATAACTTCGACGAACAAATGGTGGTTGGCGTGGGAGGCTTCGGCAACGTGTACAAAGGCTACGTAGATGAGGGTTCAGTACCTGTTGCAATCAAAAGGCTCAAACCCGGTTCTCAGCAAGGTATGCAGGAGTTCATGAACGAAATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTCATCGGTTACTGTTACGAGAACGGCGAGATGATACTTATTTATGATTTCATGGAACGCGGAACCCTCCGAGACCATCTCTACGGATCTGAAAATCAGTCCTTGACGTGGAAGCAAAGGGTCCAGATATGCATAGGTGCAGCAGGAGGGCTCCACTATCTGCATACAGGTGCAAAGCACGTCATCATTCACCGTGATGTGAAGAGTACCAATATTTTATTGGATGAAAAATGGGTAGCCAAAGTTTCAGACTTCGGGTTATCCAGAATCGGGCCCACGAGTTCTTCAATGACCCATGTGAGCACCCAGGTGAAGGGCAGTGTTGGGTATTTAGACCCGGAGTATTATAAACGACAGCGTTTGTCGGAGAAATCTGACGTGTACTCGTTTGGGGTTGTGCTGTTGGAGGTATTATGTGGGAGGCCGCCTTTGCTACGTATGGCGGAGAAGCAACAGGTGTCTCTCGTTGATTGGGCAAAACATAGATATAAGGAGGGGTGTTTGGGTGAGATTGTGGATCCAGCACTGAAGGGTCAGATAACACCTCAGTGTTTGCAAAAATTTGGAGAGGTGGCGTTGACCTGTTTGCTGGAGGATGGTACTCAAAGGCCTTCCATGAACGTCATCGTTGGAATGCTGGAACTTGTTCTGCAGCTTCAGGAGGATAGTGCTAAAAATATAGTGATGATAGACACTGGTGGGGGTTACGAAGAAGATAGTGAGGACATGTTTAGCAGTAGTCATTACAGTGTAGAACTTACAGATTATAGTAATAGCACTAGATGTAACACCTCAGGCAATACAGATGATAGCTATGGGAGTAAGCAATCTGACAGGTTGCTCTCTGAGAATGTTTTCTCTGAGATTTGGGATCCAAAGGGACGATAA 2607 0.4695 MDTSCTRTALRTILFLLLWSCLSFISMADVIYRPTDLFSISCGSSTKFSTQDTRNWTSDNPFLSPTNPSVAAPSLTPSTIQGPYTHARLSYSSFNYSFPVTPGPKFIRLFFYSTSYHNFPRFQASFSVKAGPFTLLQDFNASLNADADDDPSHPDILFREYCVYVGDGEKLNITFFPSTTYSYAFINGIEIVSMPPYLYYTNPGDSTEQQQNVGTTTPYVVGNKFALETMYRLLVGKEIPPSEDTGMLRTWVPDLKYVKTPYNQSVDYGSHTKLKFIKTYNYTAPDQVYRTVRSMGPDGSINMGFNLTWLLPVDSGFFYMLRLHFCQLDPWVNNIGDLFFNIIIADQLATDRADVLLWTDNQKGVPVVKDYVVSIQGNLNKTNLSVKLHPRPTSRIRDAVINAIEVFKINSSTGSLAGQNPNPPPQKPKVPLSSNKKSSVFTKNREAILGAVAGVLLLSSIVVFFLIKCKRNIAVESGYSKKGGTSRGGGSSSLPTNLCRYFSIAEIRAATNNFDEQMVVGVGGFGNVYKGYVDEGSVPVAIKRLKPGSQQGMQEFMNEIEMLSQLRHLHLVSLIGYCYENGEMILIYDFMERGTLRDHLYGSENQSLTWKQRVQICIGAAGGLHYLHTGAKHVIIHRDVKSTNILLDEKWVAKVSDFGLSRIGPTSSSMTHVSTQVKGSVGYLDPEYYKRQRLSEKSDVYSFGVVLLEVLCGRPPLLRMAEKQQVSLVDWAKHRYKEGCLGEIVDPALKGQITPQCLQKFGEVALTCLLEDGTQRPSMNVIVGMLELVLQLQEDSAKNIVMIDTGGGYEEDSEDMFSSSHYSVELTDYSNSTRCNTSGNTDDSYGSKQSDRLLSENVFSEIWDPKGR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8871g00002 868 Pfam Malectin-like domain 40 409 IPR024788 -
Vium8871g00002 868 FunFam FERONIA receptor-like kinase 37 195 - -
Vium8871g00002 868 Gene3D Transferase(Phosphotransferase) domain 1 591 806 - -
Vium8871g00002 868 SUPERFAMILY Protein kinase-like (PK-like) 491 788 IPR011009 -
Vium8871g00002 868 MobiDBLite consensus disorder prediction 414 436 - -
Vium8871g00002 868 FunFam receptor-like protein kinase FERONIA 479 590 - -
Vium8871g00002 868 Gene3D - 225 411 - -
Vium8871g00002 868 Gene3D - 36 194 - -
Vium8871g00002 868 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Vium8871g00002 868 FunFam FERONIA receptor-like kinase 225 410 - -
Vium8871g00002 868 Pfam Protein tyrosine and serine/threonine kinase 519 784 IPR001245 GO:0004672|GO:0006468
Vium8871g00002 868 PANTHER OS03G0124300 PROTEIN-RELATED 14 472 IPR046957 GO:0004672
Vium8871g00002 868 CDD STKc_IRAK 529 787 - -
Vium8871g00002 868 ProSiteProfiles Protein kinase domain profile. 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8871g00002 868 FunFam Receptor-like protein kinase FERONIA 591 805 - -
Vium8871g00002 868 SMART serkin_6 514 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8871g00002 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vium8871g00002 868 Gene3D Phosphorylase Kinase; domain 1 499 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8871g00002 Vium-Chr8871 4095 6819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8871g00002 20 868 Receptor kinase-like Gene Family AT3G51550 45.344 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium8871g00002 Malectin_like 1.7e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8871g00002 - - gmx:100305394 1173.3