Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8871g00001 ATGGGTCTTCTTTCACTTTTTTCATGTTTCTCTAAACCTGATGCAGGGGTAAACAGATTTCTCATGACAACAACATTCAACATCATGGGAGAACATTGTCACCACTTTTCACTTGCAGAGATACAGTCATCGTTAACGAATGCTAAGAAATCCTTGGTGATTGGAGAAGATTCATTCGGGGTAGTGTACAAGGGTTATCTGAACAAAGGTGCTACCGCTGTTGCAATAAAGTGGTTCAACAAAGGTTCTCTTTCTGGTCTCTCAGAATCACAGTTGAAGAACGAGGTTCTCTTCCTCTGTCAACTCCACCACCCCAACATCATGCCTGTAATTGGATTTTGCATTGAAAGATACCGCCATCTGATTCTTCTACATGAATACATGTTTAACGGTTCCCTCAATGATCACCTTCATCATACAAACAATCACAAATTTGTTCCACTTTCTTGGGAAAGGAGGCTTCGAATTTGCATAGGTGTGGCACGTGGATTGCACTATCTACACACAGGAGGCATGTGTTCTGTGATACACAATTTTTTCAAAACACAGTACATCCTTTTGGATCAAAACTGGGAGCCTAAAATTTCTGGTTTGCTGTTGTCCAAAAGGGGAGGCGTTGATGTTGCAAGTTCATCTCTTGTTGCGAGAAACCATGATACTTTCGCATATTGTGATCCTGAGTATGCAGCCTCTGGCATCTTGACTGTGAAATCAAATGTGTTTTCATTTGGTGTGGTTCTATTGGAAGTTCTGAGTGCAAAGCAAGCGCGAGAGTTGTACTTGGAACGTGTGAAGAACCCGAATTATTCAGTGGAGTTACATGCAGAAAAAATAGTTGATCCGTTTATTAAGTCCAAAATCGCTCCAGATTGTTGGAAAACGTTCATTGACATCACTGAGAGGTGCTTGCATAAACAAGGAACGGAACGACCAAACATGGGCGAAGTGGAGATGCAGCTTGAGCTTGCGCTTCAATTGCAGCAGAAATCCCAAACCTATGTTGACTGCAATCTTGATTTTGTCCAAACTGTTTAA 1035 0.4155 MGLLSLFSCFSKPDAGVNRFLMTTTFNIMGEHCHHFSLAEIQSSLTNAKKSLVIGEDSFGVVYKGYLNKGATAVAIKWFNKGSLSGLSESQLKNEVLFLCQLHHPNIMPVIGFCIERYRHLILLHEYMFNGSLNDHLHHTNNHKFVPLSWERRLRICIGVARGLHYLHTGGMCSVIHNFFKTQYILLDQNWEPKISGLLLSKRGGVDVASSSLVARNHDTFAYCDPEYAASGILTVKSNVFSFGVVLLEVLSAKQARELYLERVKNPNYSVELHAEKIVDPFIKSKIAPDCWKTFIDITERCLHKQGTERPNMGEVEMQLELALQLQQKSQTYVDCNLDFVQTV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8871g00001 344 ProSiteProfiles Protein kinase domain profile. 48 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8871g00001 344 Pfam Protein tyrosine and serine/threonine kinase 53 320 IPR001245 GO:0004672|GO:0006468
Vium8871g00001 344 PANTHER OS07G0166700 PROTEIN 32 327 IPR045272 GO:0004714|GO:0006468
Vium8871g00001 344 Gene3D Phosphorylase Kinase; domain 1 33 127 - -
Vium8871g00001 344 SUPERFAMILY Protein kinase-like (PK-like) 31 325 IPR011009 -
Vium8871g00001 344 Gene3D Transferase(Phosphotransferase) domain 1 128 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8871g00001 Vium-Chr8871 694 1728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8871g00001 33 331 Receptor kinase-like Gene Family AT3G51550 42.810 9.81e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium8871g00001 PK_Tyr_Ser-Thr 7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8871g00001 - - pvu:PHAVU_008G031100g 541.191