Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8865g00005 ATGTTCTCTGTAGAGAGAGTGTTAGCACAGAGCTTAGAGATGGGCCACCGCTGCTGCAGCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAGCTTCTCAGATATATCAACACACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGATTGCAGAGATGTGGCAAGAGTTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTCAAGAGGGGTTCCTTCACGACTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCACAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTTCTATCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAATATGCATAAAAAATCCAATCCCATATTCATTATGAGTTCACACACAACAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTCATTACCTAAGCCTCCACTAAACATTGTTCAAACTCCCTCCAGCATTATTACATCTGAATATCAAACATCACCTATTATTTCAAATAATATCTCGTCAGATTTGCCTTATGAACTGTTAATCGACAACGGCTCCAACATTTGTTCACCTTCGTATATGAACCCCACTGCAGTTGAATTGTCGAACAATGAAAACATTGCTGATTGGGTTTCAAGGGTTAATGTTGATGATTTCAGAGGTCAAACACTTGAAGAGGGAACACAAGTGCAGGTGCAGCAAGAGAAGGACAAGATCTGTGAGGATACTGTAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAAAGAAGTGCTTCTTTCGAGAGTTCTAACTTTGACTTTGGCTTGTTGGAGAGTGTACTTTCCTCCGAATTTATCTCTCATGATCTTAGTTGTATGGATGAACTTGCATGGAACTTTTAG 1008 0.3988 MFSVERVLAQSLEMGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKSWSSVPKYAGLQRCGKSCRLRWINYLRPDLKRGSFTTEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISNMHKKSNPIFIMSSHTTNAPVETTFQTFSSLPKPPLNIVQTPSSIITSEYQTSPIISNNISSDLPYELLIDNGSNICSPSYMNPTAVELSNNENIADWVSRVNVDDFRGQTLEEGTQVQVQQEKDKICEDTVTDVREANKGNLERSASFESSNFDFGLLESVLSSEFISHDLSCMDELAWNF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8865g00005 335 Gene3D - 23 79 - -
Vium8865g00005 335 SMART sant 25 75 IPR001005 -
Vium8865g00005 335 SMART sant 78 126 IPR001005 -
Vium8865g00005 335 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Vium8865g00005 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vium8865g00005 335 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Vium8865g00005 335 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Vium8865g00005 335 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Vium8865g00005 335 CDD SANT 29 73 IPR001005 -
Vium8865g00005 335 FunFam Transcription factor MYB86 80 154 - -
Vium8865g00005 335 FunFam MYB transcription factor 18 79 - -
Vium8865g00005 335 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Vium8865g00005 335 Coils Coil 328 335 - -
Vium8865g00005 335 CDD SANT 81 121 IPR001005 -
Vium8865g00005 335 Gene3D - 81 128 - -
Vium8865g00005 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Vium8865g00005 335 PANTHER MYB DOMAIN PROTEIN 55 14 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8865g00005 Vium-Chr8865 93197 95112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8865g00005 13 335 MYB Transcription Factor Family AT3G12720 49.390 3.09e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8865g00005 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8865g00005 K09422 - gmx:100791209 529.635