Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8865g00004 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCTACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCAAGCAAGGACATGGAATGGTACTTTTACAGTCCTAGGGACAGGAAATACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCTGTTGGCATGAAGAAGACATTGGTGTACTAAAGAGGTAGAGCACCACATGGCATTAGAACGAACTGGGTTATGCATGAATACCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGTTGTGTCGCATTTTCAAGAAGATGATTCAAATGCCTGCGAAACCTAGTAAAGAAGAAGAACAACAAGCCGAGGATGCAAAAAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTGGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACCGTGGAGGAAAAAATTCTCAATCACGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGCGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATGGGATACCCCAGCAATCTATTTCAGGATGTGGAATTAATACCTTCTTTTGCTGCCATGCATTATCAATTCCCATACACACCTTTGGTGCTGGAAGACTTCCCTCAAATTACATTGCCAGAGACAAAGTCAACGAAACCAGAAATGAGTGATCCCTGCATGTTATATGACAGACAGAGGGACTGCATGAATGGAACGCTAGAAGAGATAATCTCTTTGTGTTGCACTCAAGATAATAACGTCCCTTTTCCCATGCTAGAATGA 1047 0.426 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYXRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKMIQMPAKPSKEEEQQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGMGYPSNLFQDVELIPSFAAMHYQFPYTPLVLEDFPQITLPETKSTKPEMSDPCMLYDRQRDCMNGTLEEIISLCCTQDNNVPFPMLE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8865g00004 348 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vium8865g00004 348 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vium8865g00004 348 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vium8865g00004 348 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vium8865g00004 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 211 - -
Vium8865g00004 348 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8865g00004 Vium-Chr8865 78284 83123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8865g00004 1 337 NAC Transcription Factor Family AT1G54330 51.775 3.72e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium8865g00004 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8865g00004 - - gmx:100808325 660.988