Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8861g00001 ATGCTGGAAGTCTCTGCTTCACCGGCAACTCCTCTTGCCAACCCGGAGGGAGGCGCCGCGGCGGTCTCCGAGTGGCTCAAAGCGGAGGACGGCGAAGCCGGTGACCGGAATTCCGCCGCCAGTCGATGGCCTAAAGAGGAAACAATGGCTTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGGGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGAAATTAGCGGAGCTAGGTTATAATAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTACAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCCGACTCCCTCTGTAAGCGCCCCAGAAACAGCAACGACGACGACGACGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCCGGTAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGATGGGTTGATGAGGGAAGTGATAGAGAAGCAGGATATGCTGCAGAGGAAGTTCGTGGAGGTGTTGGAGAAGTGCGAGAAGGATCGAATGGCAAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAGCGCGAGCTTCTGGCTCAGGAACGCTCCATCGCCGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGTTGAAGGCGTGGTGCAGTTGCTGGAGAAAATCCAGGGTCAAAACAACGGGCACAGGGACATGCAACAAAGTGGGAATATCAATGCTGCGGCTAATGGAGGTGGTGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATCTGAGTGTTAGGAATTTCGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCTCAGGGGAACAATAATAGCAGTAATGGTGTGTCGAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGCCTTGGCTACGAACGCAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAAACCTGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCCAAGAGGGCTGATGTAAAGGATTTTGGGAAGGAGTTGAAGCCCGAGGAGCTGTTGTTGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAAGCGCAGCAACAACAGGTACAGAGTCACTCATCATCCGAAGATGGGGAGAAAGATGATAGGGATCAGCGTGAGGGAGATGAAGAAGATCAAAATGGGTTTCAGAATGTGATGCTTGAAAATAGTCCTTCCAGAGCAATCATGAGTTAA 1545 0.499 MLEVSASPATPLANPEGGAAAVSEWLKAEDGEAGDRNSAASRWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNGSKTYRFFEQLEALEGHHSLPTPSVSAPETATTTTTTHVPDNNTNVDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLDGLMREVIEKQDMLQRKFVEVLEKCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFTQVEGVVQLLEKIQGQNNGHRDMQQSGNINAAANGGGGGDSDVSDMDKRECGNNLSVRNFVHMSSSRWPKDEVEALIRLRTELDVQSQGNNNSSNGVSKGPLWEDISSAMKGLGYERSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRADVKDFGKELKPEELLLHIMESQSQEERQAQQQQVQSHSSSEDGEKDDRDQREGDEEDQNGFQNVMLENSPSRAIMS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8861g00001 514 MobiDBLite consensus disorder prediction 1 42 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 132 157 - -
Vium8861g00001 514 ProSiteProfiles Myb-like domain profile. 337 401 IPR001005 -
Vium8861g00001 514 Coils Coil 242 262 - -
Vium8861g00001 514 CDD GT1 41 106 - -
Vium8861g00001 514 CDD GT1 337 408 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 459 514 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 289 303 - -
Vium8861g00001 514 SMART sant 335 403 IPR001005 -
Vium8861g00001 514 SMART sant 39 101 IPR001005 -
Vium8861g00001 514 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Vium8861g00001 514 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Vium8861g00001 514 Pfam Myb/SANT-like DNA-binding domain 337 428 IPR044822 -
Vium8861g00001 514 FunFam Trihelix transcription factor GT-2 339 406 - -
Vium8861g00001 514 FunFam Trihelix transcription factor GT-2 43 104 - -
Vium8861g00001 514 PANTHER FI21293P1 28 491 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 289 316 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 477 496 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 137 157 - -
Vium8861g00001 514 Gene3D - 339 406 - -
Vium8861g00001 514 Gene3D - 43 104 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 499 514 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 28 42 - -
Vium8861g00001 514 MobiDBLite consensus disorder prediction 459 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8861g00001 Vium-Chr8861 1409 4108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8861g00001 32 436 Trihelix Transcription Factor Family AT1G76880 42.857 3.15e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium8861g00001 Myb_DNA-bind_4 3.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8861g00001 - - pvu:PHAVU_009G147500g 783.097