Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium884g00006 ATGTTTGCAGTTACACCATATTCTCCGGCGACCACGCCGGTTGACGTCGTTCCTCAGCCGTTTCCGCAACCAGCAGCACCCGCATTCCAGTCCTCGCCGTCACCATCGATGTTTCTGACGCCTCCAGCCCCGTCCTCCCCGTCGCCGGAAACTTTATTCTTCCAAGGTTTGCCTCTACCGCCATCTTCAGTTACACCTGTTCCTCTGACGGTGCCGGCGTTGCCGTCTCCGTCGCCGGAATCTCTCACACCGCCGTTTGTAGTTTCACAATCGCCTCCGGCTCCGACCGCCGCATCGCAGCCACCGCCGTTTCCATATGCCACAGCGCCTTCAACGACGTCGTTTCCGCCGCTTGTAGTTGCGCCATCGCCTCCGTCTCCCACCGCCAGTTTTCCACCTGCATTGCCAGATATGCCTCTGACACCGGAGGCGGCGGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTACCTCCTTCATTCACGACGGAACCAACCCTGGCAACGCCGTGGAGCCCCGCCTTGCCGTTATCTGCGCCGGAAGTGAATTTGCCGGTGGCTGTGGATTTTCAGAAGGCCTCAACATACCACGTGTCAAGTGGGCTCATTGTTGGGCTTGTAATTGGGGCAATCGTTTTGGTGTTTGTTTTTAGTATTGGATTAGTTCTATGCAGGAATAGGAAGAAAACCAAACAGAAGAATCTGTGCACGGGTCGCTCTAAGGAATCACCACCCTCCATTGAATACAAGGGATCTCATGTTATTCAAGTGCCACCAAATCCAACGCTGCCACCGAATCTCAAATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCTGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGGTTGTAATCCAGCAATTATTCACCGTGATATTAAGGCATCTAATATTCTTCTTGATTTTAATTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAGTCTTACCAAACGATAGCCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGAATGAGTGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGCGACAACCAATAG 1848 0.4859 MFAVTPYSPATTPVDVVPQPFPQPAAPAFQSSPSPSMFLTPPAPSSPSPETLFFQGLPLPPSSVTPVPLTVPALPSPSPESLTPPFVVSQSPPAPTAASQPPPFPYATAPSTTSFPPLVVAPSPPSPTASFPPALPDMPLTPEAAAVTTSTVPPPPLPPSFTTEPTLATPWSPALPLSAPEVNLPVAVDFQKASTYHVSSGLIVGLVIGAIVLVFVFSIGLVLCRNRKKTKQKNLCTGRSKESPPSIEYKGSHVIQVPPNPTLPPNLKSGSFKSVSVKTIPNHAPRAAFSPGNGSFTYDEILVATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEGCNPAIIHRDIKASNILLDFNFEPKVSDFGLAKVLPNDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNECLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGALEGVVSLTDLVGDVTPENTPEHNWSKYLDYGDNQ 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium884g00006 615 CDD STKc_IRAK 314 584 - -
Vium884g00006 615 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 211 592 IPR047117 -
Vium884g00006 615 ProSiteProfiles Protein kinase domain profile. 308 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00006 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vium884g00006 615 MobiDBLite consensus disorder prediction 117 139 - -
Vium884g00006 615 MobiDBLite consensus disorder prediction 75 140 - -
Vium884g00006 615 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vium884g00006 615 MobiDBLite consensus disorder prediction 13 29 - -
Vium884g00006 615 MobiDBLite consensus disorder prediction 75 110 - -
Vium884g00006 615 Gene3D Phosphorylase Kinase; domain 1 271 383 - -
Vium884g00006 615 SUPERFAMILY Protein kinase-like (PK-like) 286 582 IPR011009 -
Vium884g00006 615 SMART serkin_6 308 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00006 615 FunFam Proline-rich receptor-like protein kinase PERK8 281 383 - -
Vium884g00006 615 MobiDBLite consensus disorder prediction 1 57 - -
Vium884g00006 615 FunFam proline-rich receptor-like protein kinase PERK8 384 597 - -
Vium884g00006 615 Gene3D Transferase(Phosphotransferase) domain 1 384 592 - -
Vium884g00006 615 Pfam Protein kinase domain 309 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium884g00006 Vium-Chr884 9714 17454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium884g00006 198 597 Trihelix Transcription Factor Family AT5G38560 52.475 2.66e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium884g00006 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium884g00006 - - vum:124823967 1072.77