Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium884g00005 ATGTTTGCAGTTACACCATATTCTCCGGCGACCACGCCGGTTGACGTCGTTCCTCAGCCGTTTCCGCAACCAGCAGCACCCGCATTCCAGTCCTCGCCGTCACCATCGATGTTTCTGACGCCTCCAGCCCCGTCCTCCCCGTCGCCGGAAACTTTATTCTTCCAAGGTTTGCCTCTACCGCCATCTTCAGTTACACCTGTTCCTCTGACGGTGCCGGCGTTGCCGTCTCCGTCGCCGGAATCTCTCACACCGCCGTTTGTAGTTTCACAATCGCCTCCGGCTCCGACCGCCGCATCGCAGCCACCGCCGTTTCCATATGCCACAGCGCCTTCAACGACGTCGTTTCCGCCGCTTGTAGTTGCGCCATCGCCTCCGTCTCCCACCGCCAGTTTTCCACCTGCATTGCCAGATATGCCTCTGACACCGGAGGCGGCGGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTACCTCCTTCATTCACGACGGAACCAACCCTGGCAACGCCGTGGAGCCCCGCCTTGCCGTTATCTGCGCCGGAAGTGAATTTGCCGGTGGCTGTGGATTTTCAGAAGGCCTCAACATACCACGTGTCAAGTGGGCTCATTGTTGGGCTTGTAATTGGGGCAATCGTTTTGGTGTTTGTTTTTAGTATTGGATTAGTTCTATGCAGGAATAGGAAGAAAACCAAACAGAAGAATCTGTGCACGGGTCGCTCTAAGGAATCACCACCCTCCATTGAATACAAGGGATCTCATGTTATTCAAGTGCCACCAAATCCAACGCTGCCACCGAATCTCAAATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCTGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGGTAATCCAGCAATTATTCACCGTGATATTAAGGCATCTAATATTCTTCTTGATTTTAATTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAGTCTTACCAAACGATAGCCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGAATGAGTGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGCGACAACCAATAG 1845 0.4862 MFAVTPYSPATTPVDVVPQPFPQPAAPAFQSSPSPSMFLTPPAPSSPSPETLFFQGLPLPPSSVTPVPLTVPALPSPSPESLTPPFVVSQSPPAPTAASQPPPFPYATAPSTTSFPPLVVAPSPPSPTASFPPALPDMPLTPEAAAVTTSTVPPPPLPPSFTTEPTLATPWSPALPLSAPEVNLPVAVDFQKASTYHVSSGLIVGLVIGAIVLVFVFSIGLVLCRNRKKTKQKNLCTGRSKESPPSIEYKGSHVIQVPPNPTLPPNLKSGSFKSVSVKTIPNHAPRAAFSPGNGSFTYDEILVATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEGNPAIIHRDIKASNILLDFNFEPKVSDFGLAKVLPNDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNECLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGALEGVVSLTDLVGDVTPENTPEHNWSKYLDYGDNQ 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium884g00005 614 Pfam Protein kinase domain 309 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00005 614 ProSiteProfiles Protein kinase domain profile. 308 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00005 614 SUPERFAMILY Protein kinase-like (PK-like) 286 581 IPR011009 -
Vium884g00005 614 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 211 591 IPR047117 -
Vium884g00005 614 CDD STKc_IRAK 314 583 - -
Vium884g00005 614 MobiDBLite consensus disorder prediction 117 139 - -
Vium884g00005 614 MobiDBLite consensus disorder prediction 75 140 - -
Vium884g00005 614 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Vium884g00005 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Vium884g00005 614 MobiDBLite consensus disorder prediction 13 29 - -
Vium884g00005 614 MobiDBLite consensus disorder prediction 75 110 - -
Vium884g00005 614 Gene3D Phosphorylase Kinase; domain 1 271 383 - -
Vium884g00005 614 FunFam Proline-rich receptor-like protein kinase PERK8 281 383 - -
Vium884g00005 614 Gene3D Transferase(Phosphotransferase) domain 1 384 591 - -
Vium884g00005 614 MobiDBLite consensus disorder prediction 1 57 - -
Vium884g00005 614 SMART serkin_6 308 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00005 614 FunFam proline-rich receptor-like protein kinase PERK8 384 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium884g00005 Vium-Chr884 9714 17455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium884g00005 198 596 Trihelix Transcription Factor Family AT5G38560 52.228 5.62e-133 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium884g00005 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium884g00005 - - vum:124823967 1064.68