LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium884g00004	ATGCATTTCATGGTTTGGATAATTATTAATCTGCTTGCACACTGCATGATCTCATCATCAGGATCTCATGTTATTCAAGTGCCACCAAATCCAACGCTGCCACCGAATCTCAAATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCTGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGGTTGTAATCCAGCAATTATTCACCGTGATATTAAGGCATCTAATATTCTTCTTGATTTTAATTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAGTCTTACCAAAGGATAGCCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGAATGAGTGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGCGACAACCAATAG	1158	0.4283	MHFMVWIIINLLAHCMISSSGSHVIQVPPNPTLPPNLKSGSFKSVSVKTIPNHAPRAAFSPGNGSFTYDEILVATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEGCNPAIIHRDIKASNILLDFNFEPKVSDFGLAKVLPKDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNECLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGALEGVVSLTDLVGDVTPENTPEHNWSKYLDYGDNQ	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium884g00004	385	Pfam	Protein kinase domain	79	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium884g00004	385	SMART	serkin_6	78	325	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium884g00004	385	Gene3D	Phosphorylase Kinase; domain 1	41	153	-	-
	Vium884g00004	385	ProSiteProfiles	Protein kinase domain profile.	78	356	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium884g00004	385	Gene3D	Transferase(Phosphotransferase) domain 1	154	363	-	-
	Vium884g00004	385	FunFam	Proline-rich receptor-like protein kinase PERK8	51	153	-	-
	Vium884g00004	385	SUPERFAMILY	Protein kinase-like (PK-like)	56	352	IPR011009	-
	Vium884g00004	385	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	26	363	IPR047117	-
	Vium884g00004	385	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	198	210	IPR008271	GO:0004672\|GO:0006468
	Vium884g00004	385	CDD	STKc_IRAK	84	354	-	-
	Vium884g00004	385	ProSitePatterns	Protein kinases ATP-binding region signature.	84	106	IPR017441	GO:0005524
	Vium884g00004	385	FunFam	proline-rich receptor-like protein kinase PERK8	154	367	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium884g00004	Vium-Chr884	5640	9062	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium884g00004	22	358	Trihelix Transcription Factor Family	AT4G32710	62.537	2.70e-134	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Vium884g00004		Pkinase	1.1e-45	CL0016