Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium884g00003 ATGCATTTCATGGTTTGGATAATTATTAATCTGCTTGCACACTGCATGATCTCATCATCAGGATCTCATGTTATTCAAGTGCCACCAAATCCAACGCTGCCACCGAATCTCAAATCAGGTTCTTTTAAGTCAGTGTCTGTGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGTGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCTGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGGCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACAACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGGTAATCCAGCAATTATTCACCGTGATATTAAGGCATCTAATATTCTTCTTGATTTTAATTTTGAACCCAAGGTTTCTGACTTTGGCCTGGCAAAAGTCTTACCAAAGGATAGCCATATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTGGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCTAGGAATGAGTGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTCGAGCACTACAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAACTGCGATGCTGATGAGATGGTTAGAATGGTTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAAACTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACACCGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGCGACAACCAATAG 1155 0.4286 MHFMVWIIINLLAHCMISSSGSHVIQVPPNPTLPPNLKSGSFKSVSVKTIPNHAPRAAFSPGNGSFTYDEILVATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGAERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEGNPAIIHRDIKASNILLDFNFEPKVSDFGLAKVLPKDSHISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNECLVDWARPLLARALQEENFDNLVDPRLQKNCDADEMVRMVTCAAACVRHSSKLRPRMSQIVGALEGVVSLTDLVGDVTPENTPEHNWSKYLDYGDNQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium884g00003 384 FunFam proline-rich receptor-like protein kinase PERK8 154 366 - -
Vium884g00003 384 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 26 362 IPR047117 -
Vium884g00003 384 FunFam Proline-rich receptor-like protein kinase PERK8 51 153 - -
Vium884g00003 384 SUPERFAMILY Protein kinase-like (PK-like) 56 351 IPR011009 -
Vium884g00003 384 Pfam Protein kinase domain 79 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00003 384 CDD STKc_IRAK 84 353 - -
Vium884g00003 384 SMART serkin_6 78 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00003 384 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium884g00003 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vium884g00003 384 Gene3D Transferase(Phosphotransferase) domain 1 154 362 - -
Vium884g00003 384 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vium884g00003 384 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium884g00003 Vium-Chr884 5640 9064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium884g00003 22 357 Trihelix Transcription Factor Family AT4G32710 62.242 4.86e-131 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium884g00003 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium884g00003 - - vum:124823967 735.717